Actual source code: dmpleximpl.h
1: #pragma once
3: #include <petscmat.h>
4: #include <petscdmplex.h>
5: #include <petscdmplextransform.h>
6: #include <petscbt.h>
7: #include <petscsf.h>
8: #include <petsc/private/dmimpl.h>
10: #if PetscDefined(HAVE_EXODUSII)
11: #include <exodusII.h>
12: #endif
14: PETSC_INTERN PetscBool Plexcite;
15: PETSC_INTERN const char PlexCitation[];
17: PETSC_EXTERN PetscLogEvent DMPLEX_Interpolate;
18: PETSC_EXTERN PetscLogEvent DMPLEX_Partition;
19: PETSC_EXTERN PetscLogEvent DMPLEX_PartSelf;
20: PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelInvert;
21: PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelCreateSF;
22: PETSC_EXTERN PetscLogEvent DMPLEX_PartStratSF;
23: PETSC_EXTERN PetscLogEvent DMPLEX_CreatePointSF;
24: PETSC_EXTERN PetscLogEvent DMPLEX_Distribute;
25: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeMultistage;
26: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeCones;
27: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeLabels;
28: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeSF;
29: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeOverlap;
30: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeField;
31: PETSC_EXTERN PetscLogEvent DMPLEX_DistributeData;
32: PETSC_EXTERN PetscLogEvent DMPLEX_Migrate;
33: PETSC_EXTERN PetscLogEvent DMPLEX_InterpolateSF;
34: PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalBegin;
35: PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalEnd;
36: PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalBegin;
37: PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalEnd;
38: PETSC_EXTERN PetscLogEvent DMPLEX_Stratify;
39: PETSC_EXTERN PetscLogEvent DMPLEX_Symmetrize;
40: PETSC_EXTERN PetscLogEvent DMPLEX_Preallocate;
41: PETSC_EXTERN PetscLogEvent DMPLEX_ResidualFEM;
42: PETSC_EXTERN PetscLogEvent DMPLEX_JacobianFEM;
43: PETSC_EXTERN PetscLogEvent DMPLEX_InterpolatorFEM;
44: PETSC_EXTERN PetscLogEvent DMPLEX_InjectorFEM;
45: PETSC_EXTERN PetscLogEvent DMPLEX_IntegralFEM;
46: PETSC_EXTERN PetscLogEvent DMPLEX_CreateGmsh;
47: PETSC_EXTERN PetscLogEvent DMPLEX_CreateBoxSFC;
48: PETSC_EXTERN PetscLogEvent DMPLEX_RebalanceSharedPoints;
49: PETSC_EXTERN PetscLogEvent DMPLEX_CreateFromFile;
50: PETSC_EXTERN PetscLogEvent DMPLEX_CreateFromOptions;
51: PETSC_EXTERN PetscLogEvent DMPLEX_BuildFromCellList;
52: PETSC_EXTERN PetscLogEvent DMPLEX_BuildCoordinatesFromCellList;
53: PETSC_EXTERN PetscLogEvent DMPLEX_LocatePoints;
54: PETSC_EXTERN PetscLogEvent DMPLEX_TopologyView;
55: PETSC_EXTERN PetscLogEvent DMPLEX_DistributionView;
56: PETSC_EXTERN PetscLogEvent DMPLEX_LabelsView;
57: PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesView;
58: PETSC_EXTERN PetscLogEvent DMPLEX_SectionView;
59: PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorView;
60: PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorView;
61: PETSC_EXTERN PetscLogEvent DMPLEX_TopologyLoad;
62: PETSC_EXTERN PetscLogEvent DMPLEX_DistributionLoad;
63: PETSC_EXTERN PetscLogEvent DMPLEX_LabelsLoad;
64: PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesLoad;
65: PETSC_EXTERN PetscLogEvent DMPLEX_SectionLoad;
66: PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorLoad;
67: PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorLoad;
68: PETSC_EXTERN PetscLogEvent DMPLEX_MetricEnforceSPD;
69: PETSC_EXTERN PetscLogEvent DMPLEX_MetricNormalize;
70: PETSC_EXTERN PetscLogEvent DMPLEX_MetricAverage;
71: PETSC_EXTERN PetscLogEvent DMPLEX_MetricIntersection;
72: PETSC_EXTERN PetscLogEvent DMPLEX_Generate;
73: PETSC_EXTERN PetscLogEvent DMPLEX_GetLocalOffsets;
75: PETSC_EXTERN PetscLogEvent DMPLEX_RebalBuildGraph;
76: PETSC_EXTERN PetscLogEvent DMPLEX_RebalRewriteSF;
77: PETSC_EXTERN PetscLogEvent DMPLEX_RebalGatherGraph;
78: PETSC_EXTERN PetscLogEvent DMPLEX_RebalPartition;
79: PETSC_EXTERN PetscLogEvent DMPLEX_RebalScatterPart;
80: PETSC_EXTERN PetscLogEvent DMPLEX_Uninterpolate;
82: struct _n_PetscGridHash {
83: PetscInt dim;
84: PetscReal lower[3]; /* The lower-left corner */
85: PetscReal upper[3]; /* The upper-right corner */
86: PetscReal extent[3]; /* The box size */
87: PetscReal h[3]; /* The subbox size */
88: PetscInt n[3]; /* The number of subboxes */
89: PetscSection cellSection; /* Offsets for cells in each subbox*/
90: IS cells; /* List of cells in each subbox */
91: DMLabel cellsSparse; /* Sparse storage for cell map */
92: };
94: typedef struct {
95: PetscBool isotropic; /* Is the metric isotropic? */
96: PetscBool uniform; /* Is the metric uniform? */
97: PetscBool restrictAnisotropyFirst; /* Should anisotropy or normalization come first? */
98: PetscBool noInsert; /* Should node insertion/deletion be turned off? */
99: PetscBool noSwap; /* Should facet swapping be turned off? */
100: PetscBool noMove; /* Should node movement be turned off? */
101: PetscBool noSurf; /* Should surface modification be turned off? */
102: PetscReal h_min, h_max; /* Minimum/maximum tolerated metric magnitudes */
103: PetscReal a_max; /* Maximum tolerated anisotropy */
104: PetscReal targetComplexity; /* Target metric complexity */
105: PetscReal p; /* Degree for L-p normalization methods */
106: PetscReal gradationFactor; /* Maximum tolerated length ratio for adjacent edges */
107: PetscReal hausdorffNumber; /* Max. distance between piecewise linear representation of boundary and reconstructed ideal boundary */
108: PetscInt numIter; /* Number of ParMmg mesh adaptation iterations */
109: PetscInt verbosity; /* Level of verbosity for remesher (-1 = no output, 10 = maximum) */
110: } DMPlexMetricCtx;
112: /* Point Numbering in Plex:
114: Points are numbered contiguously by stratum. Strate are organized as follows:
116: First Stratum: Cells [height 0]
117: Second Stratum: Vertices [depth 0]
118: Third Stratum: Faces [height 1]
119: Fourth Stratum: Edges [depth 1]
121: We do this so that the numbering of a cell-vertex mesh does not change after interpolation. Within a given stratum,
122: we allow additional segregation of by cell type.
123: */
124: typedef struct {
125: PetscInt refct;
127: PetscSection coneSection; /* Layout of cones (inedges for DAG) */
128: PetscInt *cones; /* Cone for each point */
129: PetscInt *coneOrientations; /* Orientation of each cone point, means cone traversal should start on point 'o', and if negative start on -(o+1) and go in reverse */
130: PetscSection supportSection; /* Layout of cones (inedges for DAG) */
131: PetscInt *supports; /* Cone for each point */
133: struct { // DMPolytopeType is an enum (usually size 4), but this needs frequent access
134: uint8_t value_as_uint8; // in a struct to guard for stronger typing
135: } *cellTypes;
137: /* Transformation */
138: DMPlexTransform tr; /* Type of transform used to define an ephemeral mesh */
139: char *transformType; /* Type of transform for uniform cell refinement */
140: PetscBool refinementUniform; /* Flag for uniform cell refinement */
141: PetscReal refinementLimit; /* Maximum volume for refined cell */
142: PetscErrorCode (*refinementFunc)(const PetscReal[], PetscReal *); /* Function giving the maximum volume for refined cell */
144: /* Interpolation */
145: DMPlexInterpolatedFlag interpolated;
146: DMPlexInterpolatedFlag interpolatedCollective;
147: PetscBool interpolatePreferTensor; // When different orderings exist, prefer the tensor order
149: /* Ordering */
150: DMReorderDefaultFlag reorderDefault; /* Reorder the DM by default */
152: /* Distribution */
153: PetscBool distDefault; /* Distribute the DM by default */
154: PetscInt overlap; /* Overlap of the partitions as passed to DMPlexDistribute() or DMPlexDistributeOverlap() */
155: PetscInt numOvLabels; /* The number of labels used for candidate overlap points */
156: DMLabel ovLabels[16]; /* Labels used for candidate overlap points */
157: PetscInt ovValues[16]; /* Label values used for candidate overlap points */
158: PetscInt numOvExLabels; /* The number of labels used for exclusion */
159: DMLabel ovExLabels[16]; /* Labels used to exclude points from the overlap */
160: PetscInt ovExValues[16]; /* Label values used to exclude points from the overlap */
161: char *distributionName; /* Name of the specific parallel distribution of the DM */
162: MPI_Comm nonempty_comm; /* Communicator used for visualization when some processes do not have cells */
164: /* Hierarchy */
165: PetscBool regularRefinement; /* This flag signals that we are a regular refinement of coarseMesh */
167: /* Generation */
168: char *tetgenOpts; // COmmand line options for Tetgen
169: PetscReal tetgenRadiusEdgeBound; // Maximum tetgen radius-edge ratio
170: PetscReal tetgenDihedralBound; // Minimum tetgen dihedral angle
171: char *triangleOpts; // Comand line options for Triangle
172: PetscReal triangleAngBound; // Minimum triangle angle
173: PetscPartitioner partitioner; // Partitioner object
174: PetscBool partitionBalance; // Evenly divide partition overlap when distributing
175: PetscBool remeshBd;
177: /* Submesh */
178: DMLabel subpointMap; /* Label each original mesh point in the submesh with its depth, subpoint are the implicit numbering */
179: IS subpointIS; /* IS holding point number in the enclosing mesh of every point in the submesh chart */
180: PetscObjectState subpointState; /* The state of subpointMap when the subpointIS was last created */
182: /* Labels and numbering */
183: PetscObjectState depthState; /* State of depth label, so that we can determine if a user changes it */
184: PetscObjectState celltypeState; /* State of celltype label, so that we can determine if a user changes it */
185: IS globalVertexNumbers;
186: IS globalCellNumbers;
188: /* Constraints */
189: PetscSection anchorSection; /* maps constrained points to anchor points */
190: IS anchorIS; /* anchors indexed by the above section */
191: PetscErrorCode (*createanchors)(DM); /* automatically compute anchors (probably from tree constraints) */
192: PetscErrorCode (*computeanchormatrix)(DM, PetscSection, PetscSection, Mat);
194: /* Tree: automatically construct constraints for hierarchically non-conforming meshes */
195: PetscSection parentSection; /* dof == 1 if point has parent */
196: PetscInt *parents; /* point to parent */
197: PetscInt *childIDs; /* point to child ID */
198: PetscSection childSection; /* inverse of parent section */
199: PetscInt *children; /* point to children */
200: DM referenceTree; /* reference tree to which child ID's refer */
201: PetscErrorCode (*getchildsymmetry)(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
203: /* MATIS support */
204: PetscSection subdomainSection;
206: /* Adjacency */
207: PetscBool useAnchors; /* Replace constrained points with their anchors in adjacency lists */
208: PetscErrorCode (*useradjacency)(DM, PetscInt, PetscInt *, PetscInt[], void *); /* User callback for adjacency */
209: void *useradjacencyctx; /* User context for callback */
211: // Periodicity
212: struct {
213: // Specified by the user
214: PetscInt num_face_sfs; // number of face_sfs
215: PetscSF *face_sfs; // root(donor faces) <-- leaf(local faces)
216: PetscScalar (*transform)[4][4]; // geometric transform
217: // Created eagerly (depends on points)
218: PetscSF composed_sf; // root(non-periodic global points) <-- leaf(local points)
219: IS *periodic_points;
220: } periodic;
222: /* Projection */
223: PetscInt maxProjectionHeight; /* maximum height of cells used in DMPlexProject functions */
224: PetscInt activePoint; /* current active point in iteration */
226: /* Output */
227: PetscInt vtkCellHeight; /* The height of cells for output, default is 0 */
228: PetscReal scale[NUM_PETSC_UNITS]; /* The scale for each SI unit */
230: /* Geometry */
231: PetscReal minradius; /* Minimum distance from cell centroid to face */
232: PetscBool useHashLocation; /* Use grid hashing for point location */
233: PetscGridHash lbox; /* Local box for searching */
234: PetscPointFn *coordFunc; /* Function used to remap newly introduced vertices */
236: /* Neighbors */
237: PetscMPIInt *neighbors;
239: /* Metric */
240: DMPlexMetricCtx *metricCtx;
242: /* FEM */
243: PetscBool useCeed; /* This should convert to a registration system when there are more FEM backends */
244: PetscBool useMatClPerm; /* Use the closure permutation when assembling matrices */
246: /* CAD */
247: PetscBool ignoreModel; /* If TRUE, Plex refinement will skip Snap-To-Geometry feature ignoring attached CAD geometry information */
249: // Transforms
250: PetscBool saveTransform; // Flag to save transform, if this mesh was produced by a transform
251: DMPlexTransform transform; // Transform producing this mesh (note that this will hold on to the original mesh too)
253: /* Debugging */
254: PetscBool printSetValues;
255: PetscInt printAdj;
256: PetscInt printFEM;
257: PetscInt printFVM;
258: PetscInt printL2;
259: PetscInt printOrient;
260: PetscInt printLocate;
261: PetscInt printProject;
262: PetscInt printCohesive;
263: PetscReal printTol;
264: } DM_Plex;
266: PETSC_INTERN PetscErrorCode DMPlexCopy_Internal(DM, PetscBool, PetscBool, DM);
267: PETSC_INTERN PetscErrorCode DMPlexReplace_Internal(DM, DM *);
268: PETSC_INTERN PetscErrorCode DMPlexCopyEGADSInfo_Internal(DM, DM);
270: PETSC_INTERN PetscErrorCode DMPlexVTKWriteAll_VTU(DM, PetscViewer);
271: PETSC_INTERN PetscErrorCode VecView_Plex_Local(Vec, PetscViewer);
272: PETSC_INTERN PetscErrorCode VecView_Plex_Native(Vec, PetscViewer);
273: PETSC_INTERN PetscErrorCode VecView_Plex(Vec, PetscViewer);
274: PETSC_INTERN PetscErrorCode VecLoad_Plex_Local(Vec, PetscViewer);
275: PETSC_INTERN PetscErrorCode VecLoad_Plex_Native(Vec, PetscViewer);
276: PETSC_INTERN PetscErrorCode VecLoad_Plex(Vec, PetscViewer);
277: PETSC_INTERN PetscErrorCode DMPlexGetFieldType_Internal(DM, PetscSection, PetscInt, PetscInt *, PetscInt *, PetscViewerVTKFieldType *);
278: PETSC_INTERN PetscErrorCode DMPlexGetFieldTypes_Internal(DM, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscInt **, PetscViewerVTKFieldType **);
279: PETSC_INTERN PetscErrorCode DMPlexRestoreFieldTypes_Internal(DM, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscInt **, PetscViewerVTKFieldType **);
280: PETSC_INTERN PetscErrorCode DMPlexView_GLVis(DM, PetscViewer);
281: PETSC_INTERN PetscErrorCode DMSetUpGLVisViewer_Plex(PetscObject, PetscViewer);
282: #if PetscDefined(HAVE_HDF5)
283: PETSC_INTERN PetscErrorCode DMPlexTopologyView_HDF5_Internal(DM, IS, PetscViewer);
284: PETSC_INTERN PetscErrorCode DMPlexCoordinatesView_HDF5_Internal(DM, PetscViewer);
285: PETSC_INTERN PetscErrorCode DMPlexLabelsView_HDF5_Internal(DM, IS, PetscViewer);
286: PETSC_INTERN PetscErrorCode DMPlexSectionView_HDF5_Internal(DM, PetscViewer, DM);
287: PETSC_INTERN PetscErrorCode DMPlexGlobalVectorView_HDF5_Internal(DM, PetscViewer, DM, Vec);
288: PETSC_INTERN PetscErrorCode DMPlexLocalVectorView_HDF5_Internal(DM, PetscViewer, DM, Vec);
289: PETSC_INTERN PetscErrorCode DMPlexTopologyLoad_HDF5_Internal(DM, PetscViewer, PetscSF *);
290: PETSC_INTERN PetscErrorCode DMPlexCoordinatesLoad_HDF5_Internal(DM, PetscViewer, PetscSF);
291: PETSC_INTERN PetscErrorCode DMPlexLabelsLoad_HDF5_Internal(DM, PetscViewer, PetscSF);
292: PETSC_INTERN PetscErrorCode DMPlexSectionLoad_HDF5_Internal(DM, PetscViewer, DM, PetscSF, PetscSF *, PetscSF *);
293: PETSC_INTERN PetscErrorCode DMPlexVecLoad_HDF5_Internal(DM, PetscViewer, DM, PetscSF, Vec);
294: PETSC_INTERN PetscErrorCode DMPlexView_HDF5_Internal(DM, PetscViewer);
295: PETSC_INTERN PetscErrorCode DMPlexLoad_HDF5_Internal(DM, PetscViewer);
296: PETSC_INTERN PetscErrorCode DMPlexLoad_HDF5_Xdmf_Internal(DM, PetscViewer);
297: PETSC_INTERN PetscErrorCode VecView_Plex_HDF5_Internal(Vec, PetscViewer);
298: PETSC_INTERN PetscErrorCode VecView_Plex_HDF5_Native_Internal(Vec, PetscViewer);
299: PETSC_INTERN PetscErrorCode VecView_Plex_Local_HDF5_Internal(Vec, PetscViewer);
300: PETSC_INTERN PetscErrorCode VecLoad_Plex_HDF5_Internal(Vec, PetscViewer);
301: PETSC_INTERN PetscErrorCode VecLoad_Plex_HDF5_Native_Internal(Vec, PetscViewer);
302: #endif
303: PETSC_EXTERN PetscErrorCode VecView_Plex_Local_CGNS(Vec, PetscViewer);
304: #if PetscDefined(HAVE_CGNS)
305: PETSC_EXTERN PetscErrorCode VecLoad_Plex_CGNS_Internal(Vec, PetscViewer);
306: #endif
308: PETSC_INTERN PetscErrorCode DMPlexClosurePoints_Private(DM, PetscInt, const PetscInt[], IS *);
309: PETSC_INTERN PetscErrorCode DMSetFromOptions_NonRefinement_Plex(DM, PetscOptionItems);
310: PETSC_INTERN PetscErrorCode DMSetFromOptions_Overlap_Plex(DM, PetscOptionItems, PetscInt *);
311: PETSC_INTERN PetscErrorCode DMCoarsen_Plex(DM, MPI_Comm, DM *);
312: PETSC_INTERN PetscErrorCode DMCoarsenHierarchy_Plex(DM, PetscInt, DM[]);
313: PETSC_INTERN PetscErrorCode DMRefine_Plex(DM, MPI_Comm, DM *);
314: PETSC_INTERN PetscErrorCode DMRefineHierarchy_Plex(DM, PetscInt, DM[]);
315: PETSC_INTERN PetscErrorCode DMAdaptLabel_Plex(DM, Vec, DMLabel, DMLabel, DM *);
316: PETSC_INTERN PetscErrorCode DMExtrude_Plex(DM, PetscInt, DM *);
317: PETSC_INTERN PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
318: PETSC_INTERN PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
319: PETSC_INTERN PetscErrorCode DMPlexInsertBounds_Plex(DM, PetscBool, PetscReal, Vec);
320: PETSC_INTERN PetscErrorCode DMProjectFunctionLocal_Plex(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **, InsertMode, Vec);
321: PETSC_INTERN PetscErrorCode DMProjectFunctionLabelLocal_Plex(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **, InsertMode, Vec);
322: PETSC_INTERN PetscErrorCode DMProjectFieldLocal_Plex(DM, PetscReal, Vec, void (**)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode, Vec);
323: PETSC_INTERN PetscErrorCode DMProjectFieldLabelLocal_Plex(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Vec, void (**)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode, Vec);
324: PETSC_INTERN PetscErrorCode DMProjectBdFieldLabelLocal_Plex(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Vec, void (**)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode, Vec);
325: PETSC_INTERN PetscErrorCode DMComputeL2Diff_Plex(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
326: PETSC_INTERN PetscErrorCode DMComputeL2GradientDiff_Plex(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **, Vec, const PetscReal[], PetscReal *);
327: PETSC_INTERN PetscErrorCode DMComputeL2FieldDiff_Plex(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
328: PETSC_INTERN PetscErrorCode DMLocatePoints_Plex(DM, Vec, DMPointLocationType, PetscSF);
330: #if PetscDefined(HAVE_EXODUSII)
331: PETSC_INTERN PetscErrorCode DMView_PlexExodusII(DM, PetscViewer);
332: PETSC_INTERN PetscErrorCode VecView_PlexExodusII_Internal(Vec, PetscViewer);
333: PETSC_INTERN PetscErrorCode VecLoad_PlexExodusII_Internal(Vec, PetscViewer);
334: #endif
335: PETSC_INTERN PetscErrorCode DMView_PlexCGNS(DM, PetscViewer);
336: PETSC_INTERN PetscErrorCode DMPlexCreateCGNSFromFile_Internal(MPI_Comm, const char *, PetscBool, DM *);
337: PETSC_INTERN PetscErrorCode DMPlexCreateCGNS_Internal_Serial(MPI_Comm, PetscInt, PetscBool, DM *);
338: PETSC_INTERN PetscErrorCode DMPlexCreateCGNS_Internal_Parallel(MPI_Comm, PetscInt, PetscBool, DM *);
339: PETSC_INTERN PetscErrorCode DMPlexVTKGetCellType_Internal(DM, PetscInt, PetscInt, PetscInt *);
340: PETSC_INTERN PetscErrorCode DMPlexGetAdjacency_Internal(DM, PetscInt, PetscBool, PetscBool, PetscBool, PetscInt *, PetscInt *[]);
341: PETSC_INTERN PetscErrorCode DMPlexGetMaxAdjacencySize_Internal(DM, PetscBool, PetscInt *);
342: PETSC_INTERN PetscErrorCode DMPlexGetRawFaces_Internal(DM, DMPolytopeType, const PetscInt[], PetscInt *, const DMPolytopeType *[], const PetscInt *[], const PetscInt *[]);
343: PETSC_INTERN PetscErrorCode DMPlexRestoreRawFaces_Internal(DM, DMPolytopeType, const PetscInt[], PetscInt *, const DMPolytopeType *[], const PetscInt *[], const PetscInt *[]);
344: PETSC_INTERN PetscErrorCode DMPlexComputeCellType_Internal(DM, PetscInt, PetscInt, DMPolytopeType *);
345: PETSC_INTERN PetscErrorCode DMPlexVecSetFieldClosure_Internal(DM, PetscSection, Vec, PetscBool[], PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscScalar[], InsertMode);
346: PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceTree_SetTree(DM, PetscSection, PetscInt[], PetscInt[]);
347: PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceTree_Union(DM, DM, const char *, DM *);
348: PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorTree(DM, DM, PetscSF, PetscInt *, Mat);
349: PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorTree(DM, DM, PetscSF, PetscInt *, Mat);
350: PETSC_INTERN PetscErrorCode DMPlexAnchorsModifyMat(DM, PetscSection, PetscInt, PetscInt, const PetscInt[], const PetscInt ***, const PetscScalar[], PetscInt *, PetscInt *, PetscInt *[], PetscScalar *[], PetscInt[], PetscBool);
351: PETSC_INTERN PetscErrorCode DMPlexAnchorsModifyMat_Internal(DM, PetscSection, PetscInt, PetscInt, const PetscInt[], const PetscInt ***, PetscInt, PetscInt, const PetscScalar[], PetscInt *, PetscInt *, PetscInt *[], PetscScalar *[], PetscInt[], PetscBool, PetscBool);
352: PETSC_INTERN PetscErrorCode DMPlexAnchorsGetSubMatModification(DM, PetscSection, PetscInt, PetscInt, const PetscInt[], const PetscInt ***, PetscInt *, PetscInt *, PetscInt *[], PetscInt[], PetscScalar *[]);
353: PETSC_INTERN PetscErrorCode DMPlexLocatePoint_Internal(DM, PetscInt, const PetscScalar[], PetscInt, PetscInt *);
354: /* this is PETSC_EXTERN just because of src/dm/impls/plex/tests/ex18.c */
355: PETSC_EXTERN PetscErrorCode DMPlexOrientInterface_Internal(DM);
356: PETSC_INTERN PetscErrorCode DMPlexOrientCells_Internal(DM, IS, IS);
358: /* Applications may use this function */
359: PETSC_EXTERN PetscErrorCode DMPlexCreateNumbering_Plex(DM, PetscInt, PetscInt, PetscInt, PetscInt *, PetscSF, IS *);
361: PETSC_INTERN PetscErrorCode DMPlexInterpolateInPlace_Internal(DM);
362: PETSC_INTERN PetscErrorCode DMPlexCreateBoxMesh_Tensor_SFC_Internal(DM, PetscInt, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool);
363: PETSC_INTERN PetscErrorCode DMPlexMigrateIsoperiodicFaceSF_Internal(DM, DM, PetscSF);
364: PETSC_INTERN PetscErrorCode DMPlexCreateVertexNumbering_Internal(DM, PetscBool, IS *);
365: PETSC_INTERN PetscErrorCode DMPlexRefine_Internal(DM, Vec, DMLabel, DMLabel, DM *);
366: PETSC_INTERN PetscErrorCode DMPlexCoarsen_Internal(DM, Vec, DMLabel, DMLabel, DM *);
367: PETSC_INTERN PetscErrorCode DMCreateMatrix_Plex(DM, Mat *);
369: PETSC_INTERN PetscErrorCode DMPlexGetOverlap_Plex(DM, PetscInt *);
370: PETSC_INTERN PetscErrorCode DMPlexSetOverlap_Plex(DM, DM, PetscInt);
371: PETSC_INTERN PetscErrorCode DMPlexDistributeGetDefault_Plex(DM, PetscBool *);
372: PETSC_INTERN PetscErrorCode DMPlexDistributeSetDefault_Plex(DM, PetscBool);
373: PETSC_INTERN PetscErrorCode DMPlexReorderGetDefault_Plex(DM, DMReorderDefaultFlag *);
374: PETSC_INTERN PetscErrorCode DMPlexReorderSetDefault_Plex(DM, DMReorderDefaultFlag);
375: PETSC_INTERN PetscErrorCode DMPlexGetUseCeed_Plex(DM, PetscBool *);
376: PETSC_INTERN PetscErrorCode DMPlexSetUseCeed_Plex(DM, PetscBool);
377: PETSC_INTERN PetscErrorCode DMReorderSectionGetDefault_Plex(DM, DMReorderDefaultFlag *);
378: PETSC_INTERN PetscErrorCode DMReorderSectionSetDefault_Plex(DM, DMReorderDefaultFlag);
379: PETSC_INTERN PetscErrorCode DMReorderSectionGetType_Plex(DM, MatOrderingType *);
380: PETSC_INTERN PetscErrorCode DMReorderSectionSetType_Plex(DM, MatOrderingType);
382: #if 1
383: static inline PetscInt DihedralInvert(PetscInt N, PetscInt a)
384: {
385: return (a <= 0) ? a : (N - a);
386: }
388: static inline PetscInt DihedralCompose(PetscInt N, PetscInt a, PetscInt b)
389: {
390: if (!N) return 0;
391: return (a >= 0) ? ((b >= 0) ? ((a + b) % N) : -(((a - b - 1) % N) + 1)) : ((b >= 0) ? -(((N - b - a - 1) % N) + 1) : ((N + b - a) % N));
392: }
394: static inline PetscInt DihedralSwap(PetscInt N, PetscInt a, PetscInt b)
395: {
396: return DihedralCompose(N, DihedralInvert(N, a), b);
397: }
398: #else
399: /* TODO
400: This is a reimplementation of the tensor dihedral symmetries using the new orientations.
401: These should be turned on when we convert to new-style orientations in p4est.
402: */
403: /* invert dihedral symmetry: return a^-1,
404: * using the representation described in
405: * DMPlexGetConeOrientation() */
406: static inline PetscInt DihedralInvert(PetscInt N, PetscInt a)
407: {
408: switch (N) {
409: case 0:
410: return 0;
411: case 2:
412: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_SEGMENT, 0, a);
413: case 4:
414: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_QUADRILATERAL, 0, a);
415: case 8:
416: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_HEXAHEDRON, 0, a);
417: default:
418: SETERRABORT(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid celltype for DihedralInvert()");
419: }
420: return 0;
421: }
423: /* compose dihedral symmetry: return b * a,
424: * using the representation described in
425: * DMPlexGetConeOrientation() */
426: static inline PetscInt DihedralCompose(PetscInt N, PetscInt a, PetscInt b)
427: {
428: switch (N) {
429: case 0:
430: return 0;
431: case 2:
432: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_SEGMENT, b, a);
433: case 4:
434: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_QUADRILATERAL, b, a);
435: case 8:
436: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_HEXAHEDRON, b, a);
437: default:
438: SETERRABORT(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid celltype for DihedralCompose()");
439: }
440: return 0;
441: }
443: /* swap dihedral symmetries: return b * a^-1,
444: * using the representation described in
445: * DMPlexGetConeOrientation() */
446: static inline PetscInt DihedralSwap(PetscInt N, PetscInt a, PetscInt b)
447: {
448: switch (N) {
449: case 0:
450: return 0;
451: case 2:
452: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_SEGMENT, b, a);
453: case 4:
454: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_QUADRILATERAL, b, a);
455: case 8:
456: return DMPolytopeTypeComposeOrientationInv(DM_POLYTOPE_HEXAHEDRON, b, a);
457: default:
458: SETERRABORT(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid celltype for DihedralCompose()");
459: }
460: return 0;
461: }
462: #endif
463: PETSC_INTERN PetscInt DMPolytopeConvertNewOrientation_Internal(DMPolytopeType, PetscInt);
464: PETSC_INTERN PetscInt DMPolytopeConvertOldOrientation_Internal(DMPolytopeType, PetscInt);
465: PETSC_INTERN PetscErrorCode DMPlexConvertOldOrientations_Internal(DM);
467: PETSC_SINGLE_LIBRARY_VISIBILITY_INTERNAL PetscErrorCode DMPlexComputeIntegral_Internal(DM, Vec, PetscInt, PetscInt, PetscScalar *, void *);
468: PETSC_INTERN PetscErrorCode DMPlexReconstructGradients_Internal(DM, PetscFV, PetscInt, PetscInt, Vec, Vec, Vec, Vec);
470: /* Matvec with A in row-major storage, x and y can be aliased */
471: static inline void DMPlex_Mult2D_Internal(const PetscScalar A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
472: {
473: const PetscScalar z[2] = {x[0 * ldx], x[1 * ldx]};
474: y[0 * ldx] = A[0] * z[0] + A[1] * z[1];
475: y[1 * ldx] = A[2] * z[0] + A[3] * z[1];
476: (void)PetscLogFlops(6.0);
477: }
478: static inline void DMPlex_Mult3D_Internal(const PetscScalar A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
479: {
480: const PetscScalar z[3] = {x[0 * ldx], x[1 * ldx], x[2 * ldx]};
481: y[0 * ldx] = A[0] * z[0] + A[1] * z[1] + A[2] * z[2];
482: y[1 * ldx] = A[3] * z[0] + A[4] * z[1] + A[5] * z[2];
483: y[2 * ldx] = A[6] * z[0] + A[7] * z[1] + A[8] * z[2];
484: (void)PetscLogFlops(15.0);
485: }
486: static inline void DMPlex_MultTranspose2D_Internal(const PetscScalar A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
487: {
488: const PetscScalar z[2] = {x[0 * ldx], x[1 * ldx]};
489: y[0 * ldx] = A[0] * z[0] + A[2] * z[1];
490: y[1 * ldx] = A[1] * z[0] + A[3] * z[1];
491: (void)PetscLogFlops(6.0);
492: }
493: static inline void DMPlex_MultTranspose3D_Internal(const PetscScalar A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
494: {
495: const PetscScalar z[3] = {x[0 * ldx], x[1 * ldx], x[2 * ldx]};
496: y[0 * ldx] = PetscConj(A[0]) * z[0] + PetscConj(A[3]) * z[1] + PetscConj(A[6]) * z[2];
497: y[1 * ldx] = PetscConj(A[1]) * z[0] + PetscConj(A[4]) * z[1] + PetscConj(A[7]) * z[2];
498: y[2 * ldx] = PetscConj(A[2]) * z[0] + PetscConj(A[5]) * z[1] + PetscConj(A[8]) * z[2];
499: (void)PetscLogFlops(15.0);
500: }
501: static inline void DMPlex_Mult2DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
502: {
503: const PetscScalar z[2] = {x[0 * ldx], x[1 * ldx]};
504: y[0 * ldx] = A[0] * z[0] + A[1] * z[1];
505: y[1 * ldx] = A[2] * z[0] + A[3] * z[1];
506: (void)PetscLogFlops(6.0);
507: }
508: static inline void DMPlex_Mult3DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
509: {
510: const PetscScalar z[3] = {x[0 * ldx], x[1 * ldx], x[2 * ldx]};
511: y[0 * ldx] = A[0] * z[0] + A[1] * z[1] + A[2] * z[2];
512: y[1 * ldx] = A[3] * z[0] + A[4] * z[1] + A[5] * z[2];
513: y[2 * ldx] = A[6] * z[0] + A[7] * z[1] + A[8] * z[2];
514: (void)PetscLogFlops(15.0);
515: }
516: static inline void DMPlex_MultAdd2DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
517: {
518: const PetscScalar z[2] = {x[0 * ldx], x[1 * ldx]};
519: y[0 * ldx] += A[0] * z[0] + A[1] * z[1];
520: y[1 * ldx] += A[2] * z[0] + A[3] * z[1];
521: (void)PetscLogFlops(6.0);
522: }
523: static inline void DMPlex_MultAdd3DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
524: {
525: const PetscScalar z[3] = {x[0 * ldx], x[1 * ldx], x[2 * ldx]};
526: y[0 * ldx] += A[0] * z[0] + A[1] * z[1] + A[2] * z[2];
527: y[1 * ldx] += A[3] * z[0] + A[4] * z[1] + A[5] * z[2];
528: y[2 * ldx] += A[6] * z[0] + A[7] * z[1] + A[8] * z[2];
529: (void)PetscLogFlops(15.0);
530: }
531: /*
532: A: packed, row-major m x n array
533: x: length m array
534: y: length n arra
535: ldx: the stride in x and y
537: A[i,j] = A[i * n + j]
538: A^T[j,i] = A[i,j]
539: */
540: static inline void DMPlex_MultTransposeReal_Internal(const PetscReal A[], PetscInt m, PetscInt n, PetscInt ldx, const PetscScalar x[], PetscScalar y[])
541: {
542: PetscScalar z[3];
543: PetscInt i, j;
544: for (i = 0; i < m; ++i) z[i] = x[i * ldx];
545: for (j = 0; j < n; ++j) {
546: const PetscInt l = j * ldx;
547: y[l] = 0;
548: for (i = 0; i < m; ++i) y[l] += A[i * n + j] * z[i];
549: }
550: (void)PetscLogFlops(2 * m * n);
551: }
552: static inline void DMPlex_MultTranspose2DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
553: {
554: const PetscScalar z[2] = {x[0 * ldx], x[1 * ldx]};
555: y[0 * ldx] = A[0] * z[0] + A[2] * z[1];
556: y[1 * ldx] = A[1] * z[0] + A[3] * z[1];
557: (void)PetscLogFlops(6.0);
558: }
559: static inline void DMPlex_MultTranspose3DReal_Internal(const PetscReal A[], PetscInt ldx, const PetscScalar x[], PetscScalar y[])
560: {
561: const PetscScalar z[3] = {x[0 * ldx], x[1 * ldx], x[2 * ldx]};
562: y[0 * ldx] = A[0] * z[0] + A[3] * z[1] + A[6] * z[2];
563: y[1 * ldx] = A[1] * z[0] + A[4] * z[1] + A[7] * z[2];
564: y[2 * ldx] = A[2] * z[0] + A[5] * z[1] + A[8] * z[2];
565: (void)PetscLogFlops(15.0);
566: }
568: static inline void DMPlex_MatMult2D_Internal(const PetscScalar A[], PetscInt n, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
569: {
570: #define PLEX_DIM__ 2
571: PetscScalar z[PLEX_DIM__];
572: for (PetscInt j = 0; j < n; ++j) {
573: for (int d = 0; d < PLEX_DIM__; ++d) z[d] = B[d * ldb + j];
574: DMPlex_Mult2D_Internal(A, 1, z, z);
575: for (int d = 0; d < PLEX_DIM__; ++d) C[d * ldb + j] = z[d];
576: }
577: (void)PetscLogFlops(8.0 * n);
578: #undef PLEX_DIM__
579: }
580: static inline void DMPlex_MatMult3D_Internal(const PetscScalar A[], PetscInt n, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
581: {
582: #define PLEX_DIM__ 3
583: PetscScalar z[PLEX_DIM__];
584: for (PetscInt j = 0; j < n; ++j) {
585: for (int d = 0; d < PLEX_DIM__; ++d) z[d] = B[d * ldb + j];
586: DMPlex_Mult3D_Internal(A, 1, z, z);
587: for (int d = 0; d < PLEX_DIM__; ++d) C[d * ldb + j] = z[d];
588: }
589: (void)PetscLogFlops(8.0 * n);
590: #undef PLEX_DIM__
591: }
592: static inline void DMPlex_MatMultTranspose2D_Internal(const PetscScalar A[], PetscInt n, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
593: {
594: #define PLEX_DIM__ 2
595: PetscScalar z[PLEX_DIM__];
596: for (PetscInt j = 0; j < n; ++j) {
597: for (int d = 0; d < PLEX_DIM__; ++d) z[d] = B[d * ldb + j];
598: DMPlex_MultTranspose2D_Internal(A, 1, z, z);
599: for (int d = 0; d < PLEX_DIM__; ++d) C[d * ldb + j] = z[d];
600: }
601: (void)PetscLogFlops(8.0 * n);
602: #undef PLEX_DIM__
603: }
604: static inline void DMPlex_MatMultTranspose3D_Internal(const PetscScalar A[], PetscInt n, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
605: {
606: #define PLEX_DIM__ 3
607: PetscScalar z[PLEX_DIM__];
608: for (PetscInt j = 0; j < n; ++j) {
609: for (int d = 0; d < PLEX_DIM__; ++d) z[d] = B[d * ldb + j];
610: DMPlex_MultTranspose3D_Internal(A, 1, z, z);
611: for (int d = 0; d < PLEX_DIM__; ++d) C[d * ldb + j] = z[d];
612: }
613: (void)PetscLogFlops(8.0 * n);
614: #undef PLEX_DIM__
615: }
617: static inline void DMPlex_MatMultLeft2D_Internal(const PetscScalar A[], PetscInt m, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
618: {
619: for (PetscInt j = 0; j < m; ++j) DMPlex_MultTranspose2D_Internal(A, 1, &B[j * ldb], &C[j * ldb]);
620: (void)PetscLogFlops(8.0 * m);
621: }
622: static inline void DMPlex_MatMultLeft3D_Internal(const PetscScalar A[], PetscInt m, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
623: {
624: for (PetscInt j = 0; j < m; ++j) DMPlex_MultTranspose3D_Internal(A, 1, &B[j * ldb], &C[j * ldb]);
625: (void)PetscLogFlops(8.0 * m);
626: }
627: static inline void DMPlex_MatMultTransposeLeft2D_Internal(const PetscScalar A[], PetscInt m, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
628: {
629: for (PetscInt j = 0; j < m; ++j) DMPlex_Mult2D_Internal(A, 1, &B[j * ldb], &C[j * ldb]);
630: (void)PetscLogFlops(8.0 * m);
631: }
632: static inline void DMPlex_MatMultTransposeLeft3D_Internal(const PetscScalar A[], PetscInt m, PetscInt ldb, const PetscScalar B[], PetscScalar C[])
633: {
634: for (PetscInt j = 0; j < m; ++j) DMPlex_Mult3D_Internal(A, 1, &B[j * ldb], &C[j * ldb]);
635: (void)PetscLogFlops(8.0 * m);
636: }
638: static inline void DMPlex_PTAP2DReal_Internal(const PetscReal P[], const PetscScalar A[], PetscScalar C[])
639: {
640: PetscScalar out[4];
641: PetscInt i, j, k, l;
642: for (i = 0; i < 2; ++i) {
643: for (j = 0; j < 2; ++j) {
644: out[i * 2 + j] = 0.;
645: for (k = 0; k < 2; ++k) {
646: for (l = 0; l < 2; ++l) out[i * 2 + j] += P[k * 2 + i] * A[k * 2 + l] * P[l * 2 + j];
647: }
648: }
649: }
650: for (i = 0; i < 2 * 2; ++i) C[i] = out[i];
651: (void)PetscLogFlops(48.0);
652: }
653: static inline void DMPlex_PTAP3DReal_Internal(const PetscReal P[], const PetscScalar A[], PetscScalar C[])
654: {
655: PetscScalar out[9];
656: PetscInt i, j, k, l;
657: for (i = 0; i < 3; ++i) {
658: for (j = 0; j < 3; ++j) {
659: out[i * 3 + j] = 0.;
660: for (k = 0; k < 3; ++k) {
661: for (l = 0; l < 3; ++l) out[i * 3 + j] += P[k * 3 + i] * A[k * 3 + l] * P[l * 3 + j];
662: }
663: }
664: }
665: for (i = 0; i < 2 * 2; ++i) C[i] = out[i];
666: (void)PetscLogFlops(243.0);
667: }
668: /* TODO Fix for aliasing of A and C */
669: static inline void DMPlex_PTAPReal_Internal(const PetscReal P[], PetscInt m, PetscInt n, const PetscScalar A[], PetscScalar C[])
670: {
671: PetscInt i, j, k, l;
672: for (i = 0; i < n; ++i) {
673: for (j = 0; j < n; ++j) {
674: C[i * n + j] = 0.;
675: for (k = 0; k < m; ++k) {
676: for (l = 0; l < m; ++l) C[i * n + j] += P[k * n + i] * A[k * m + l] * P[l * n + j];
677: }
678: }
679: }
680: (void)PetscLogFlops(243.0);
681: }
683: static inline void DMPlex_Transpose2D_Internal(PetscScalar A[])
684: {
685: PetscScalar tmp;
686: tmp = A[1];
687: A[1] = A[2];
688: A[2] = tmp;
689: }
690: static inline void DMPlex_Transpose3D_Internal(PetscScalar A[])
691: {
692: PetscScalar tmp;
693: tmp = A[1];
694: A[1] = A[3];
695: A[3] = tmp;
696: tmp = A[2];
697: A[2] = A[6];
698: A[6] = tmp;
699: tmp = A[5];
700: A[5] = A[7];
701: A[7] = tmp;
702: }
704: static inline void DMPlex_Invert2D_Internal(PetscReal invJ[], PetscReal J[], PetscReal detJ)
705: {
706: // Allow zero volume cells
707: const PetscReal invDet = detJ == 0 ? 1.0 : (PetscReal)1.0 / detJ;
709: invJ[0] = invDet * J[3];
710: invJ[1] = -invDet * J[1];
711: invJ[2] = -invDet * J[2];
712: invJ[3] = invDet * J[0];
713: (void)PetscLogFlops(5.0);
714: }
716: static inline void DMPlex_Invert3D_Internal(PetscReal invJ[], PetscReal J[], PetscReal detJ)
717: {
718: // Allow zero volume cells
719: const PetscReal invDet = detJ == 0 ? 1.0 : (PetscReal)1.0 / detJ;
721: invJ[0 * 3 + 0] = invDet * (J[1 * 3 + 1] * J[2 * 3 + 2] - J[1 * 3 + 2] * J[2 * 3 + 1]);
722: invJ[0 * 3 + 1] = invDet * (J[0 * 3 + 2] * J[2 * 3 + 1] - J[0 * 3 + 1] * J[2 * 3 + 2]);
723: invJ[0 * 3 + 2] = invDet * (J[0 * 3 + 1] * J[1 * 3 + 2] - J[0 * 3 + 2] * J[1 * 3 + 1]);
724: invJ[1 * 3 + 0] = invDet * (J[1 * 3 + 2] * J[2 * 3 + 0] - J[1 * 3 + 0] * J[2 * 3 + 2]);
725: invJ[1 * 3 + 1] = invDet * (J[0 * 3 + 0] * J[2 * 3 + 2] - J[0 * 3 + 2] * J[2 * 3 + 0]);
726: invJ[1 * 3 + 2] = invDet * (J[0 * 3 + 2] * J[1 * 3 + 0] - J[0 * 3 + 0] * J[1 * 3 + 2]);
727: invJ[2 * 3 + 0] = invDet * (J[1 * 3 + 0] * J[2 * 3 + 1] - J[1 * 3 + 1] * J[2 * 3 + 0]);
728: invJ[2 * 3 + 1] = invDet * (J[0 * 3 + 1] * J[2 * 3 + 0] - J[0 * 3 + 0] * J[2 * 3 + 1]);
729: invJ[2 * 3 + 2] = invDet * (J[0 * 3 + 0] * J[1 * 3 + 1] - J[0 * 3 + 1] * J[1 * 3 + 0]);
730: (void)PetscLogFlops(37.0);
731: }
733: static inline void DMPlex_Det2D_Internal(PetscReal *detJ, const PetscReal J[])
734: {
735: *detJ = J[0] * J[3] - J[1] * J[2];
736: (void)PetscLogFlops(3.0);
737: }
739: static inline void DMPlex_Det3D_Internal(PetscReal *detJ, const PetscReal J[])
740: {
741: *detJ = (J[0 * 3 + 0] * (J[1 * 3 + 1] * J[2 * 3 + 2] - J[1 * 3 + 2] * J[2 * 3 + 1]) + J[0 * 3 + 1] * (J[1 * 3 + 2] * J[2 * 3 + 0] - J[1 * 3 + 0] * J[2 * 3 + 2]) + J[0 * 3 + 2] * (J[1 * 3 + 0] * J[2 * 3 + 1] - J[1 * 3 + 1] * J[2 * 3 + 0]));
742: (void)PetscLogFlops(12.0);
743: }
745: static inline void DMPlex_Det2D_Scalar_Internal(PetscReal *detJ, const PetscScalar J[])
746: {
747: *detJ = PetscRealPart(J[0]) * PetscRealPart(J[3]) - PetscRealPart(J[1]) * PetscRealPart(J[2]);
748: (void)PetscLogFlops(3.0);
749: }
751: static inline void DMPlex_Det3D_Scalar_Internal(PetscReal *detJ, const PetscScalar J[])
752: {
753: *detJ = (PetscRealPart(J[0 * 3 + 0]) * (PetscRealPart(J[1 * 3 + 1]) * PetscRealPart(J[2 * 3 + 2]) - PetscRealPart(J[1 * 3 + 2]) * PetscRealPart(J[2 * 3 + 1])) + PetscRealPart(J[0 * 3 + 1]) * (PetscRealPart(J[1 * 3 + 2]) * PetscRealPart(J[2 * 3 + 0]) - PetscRealPart(J[1 * 3 + 0]) * PetscRealPart(J[2 * 3 + 2])) + PetscRealPart(J[0 * 3 + 2]) * (PetscRealPart(J[1 * 3 + 0]) * PetscRealPart(J[2 * 3 + 1]) - PetscRealPart(J[1 * 3 + 1]) * PetscRealPart(J[2 * 3 + 0])));
754: (void)PetscLogFlops(12.0);
755: }
757: static inline void DMPlex_WaxpyD_Internal(PetscInt dim, PetscReal a, const PetscReal *x, const PetscReal *y, PetscReal *w)
758: {
759: PetscInt d;
760: for (d = 0; d < dim; ++d) w[d] = a * x[d] + y[d];
761: }
763: static inline PetscReal DMPlex_DotD_Internal(PetscInt dim, const PetscScalar *x, const PetscReal *y)
764: {
765: PetscReal sum = 0.0;
766: PetscInt d;
767: for (d = 0; d < dim; ++d) sum += PetscRealPart(x[d]) * y[d];
768: return sum;
769: }
771: static inline PetscReal DMPlex_DotRealD_Internal(PetscInt dim, const PetscReal *x, const PetscReal *y)
772: {
773: PetscReal sum = 0.0;
774: PetscInt d;
775: for (d = 0; d < dim; ++d) sum += x[d] * y[d];
776: return sum;
777: }
779: static inline PetscReal DMPlex_NormD_Internal(PetscInt dim, const PetscReal *x)
780: {
781: PetscReal sum = 0.0;
782: PetscInt d;
783: for (d = 0; d < dim; ++d) sum += x[d] * x[d];
784: return PetscSqrtReal(sum);
785: }
787: static inline PetscReal DMPlex_DistD_Internal(PetscInt dim, const PetscScalar *x, const PetscScalar *y)
788: {
789: PetscReal sum = 0.0;
790: PetscInt d;
791: for (d = 0; d < dim; ++d) sum += PetscRealPart(PetscConj(x[d] - y[d]) * (x[d] - y[d]));
792: return PetscSqrtReal(sum);
793: }
795: static inline PetscReal DMPlex_DistRealD_Internal(PetscInt dim, const PetscReal *x, const PetscReal *y)
796: {
797: PetscReal sum = 0.0;
798: PetscInt d;
799: for (d = 0; d < dim; ++d) sum += (x[d] - y[d]) * (x[d] - y[d]);
800: return PetscSqrtReal(sum);
801: }
803: PETSC_INTERN PetscErrorCode DMPlexGetPointDualSpaceFEM(DM, PetscInt, PetscInt, PetscDualSpace *);
804: PETSC_INTERN PetscErrorCode DMPlexGetIndicesPoint_Internal(PetscSection, PetscBool, PetscInt, PetscInt, PetscInt *, PetscBool, const PetscInt[], const PetscInt[], PetscInt[]);
805: PETSC_INTERN PetscErrorCode DMPlexGetIndicesPointFields_Internal(PetscSection, PetscBool, PetscInt, PetscInt, PetscInt[], PetscBool, const PetscInt ***, PetscInt, const PetscInt[], PetscInt[]);
806: PETSC_INTERN PetscErrorCode DMPlexGetTransitiveClosure_Internal(DM, PetscInt, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
807: PETSC_INTERN PetscErrorCode DMPlexMatSetClosure_Internal(DM, PetscSection, PetscSection, PetscBool, Mat, PetscInt, const PetscScalar[], InsertMode);
809: PETSC_SINGLE_LIBRARY_VISIBILITY_INTERNAL PetscErrorCode DMPlexGetAllCells_Internal(DM, IS *);
810: PETSC_INTERN PetscErrorCode DMPlexGetAllFaces_Internal(DM, IS *);
811: PETSC_EXTERN PetscErrorCode DMSNESGetFEGeom(DMField, IS, PetscQuadrature, PetscFEGeomMode, PetscFEGeom **);
812: PETSC_EXTERN PetscErrorCode DMSNESRestoreFEGeom(DMField, IS, PetscQuadrature, PetscBool, PetscFEGeom **);
813: PETSC_SINGLE_LIBRARY_VISIBILITY_INTERNAL PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM, PetscSection, IS, PetscReal, Vec, Vec, Vec, void *);
814: PETSC_SINGLE_LIBRARY_VISIBILITY_INTERNAL PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM, PetscSection, PetscSection, IS, PetscReal, PetscReal, Vec, Vec, Mat, Mat, void *);
815: PETSC_INTERN PetscErrorCode DMCreateSubDomainDM_Plex(DM, DMLabel, PetscInt, IS *, DM *);
816: PETSC_INTERN PetscErrorCode DMPlexBasisTransformPoint_Internal(DM, DM, Vec, PetscInt, PetscBool[], PetscBool, PetscScalar *);
817: PETSC_INTERN PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM, DM, Vec, PetscInt, PetscBool, PetscInt, PetscScalar *);
818: PETSC_INTERN PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM, const PetscReal[], PetscBool, PetscInt, const PetscReal *, PetscReal *, void *);
819: PETSC_INTERN PetscErrorCode DMPlexBasisTransformApply_Internal(DM, const PetscReal[], PetscBool, PetscInt, const PetscScalar *, PetscScalar *, void *);
820: PETSC_INTERN PetscErrorCode DMCreateNeumannOverlap_Plex(DM, IS *, Mat *, PetscErrorCode (**)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void *), void **);
821: PETSC_INTERN PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM, PetscInt, PetscInt, DMLabel, PetscBool);
822: PETSC_INTERN PetscErrorCode DMPlexDistributeOverlap_Internal(DM, PetscInt, MPI_Comm, const char *, PetscSF *, DM *);
824: PETSC_INTERN PetscErrorCode DMPlexInterpolateFaces_Internal(DM, PetscInt, DM);
826: PETSC_INTERN PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM, DMLabel, PetscInt, PetscBool, PetscBool, DMLabel, DM);
828: PETSC_INTERN PetscErrorCode DMPeriodicCoordinateSetUp_Internal(DM);
830: /* Functions in the vtable */
831: PETSC_INTERN PetscErrorCode DMCreateInterpolation_Plex(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling);
832: PETSC_INTERN PetscErrorCode DMCreateInjection_Plex(DM dmCoarse, DM dmFine, Mat *mat);
833: PETSC_INTERN PetscErrorCode DMCreateMassMatrix_Plex(DM dmCoarse, DM dmFine, Mat *mat);
834: PETSC_INTERN PetscErrorCode DMCreateMassMatrixLumped_Plex(DM, Vec *, Vec *);
835: PETSC_INTERN PetscErrorCode DMCreateGradientMatrix_Plex(DM dmCoarse, DM dmFine, Mat *mat);
836: PETSC_INTERN PetscErrorCode DMCreateLocalSection_Plex(DM dm);
837: PETSC_INTERN PetscErrorCode DMCreateDefaultConstraints_Plex(DM dm);
838: PETSC_INTERN PetscErrorCode DMCreateMatrix_Plex(DM dm, Mat *J);
839: PETSC_INTERN PetscErrorCode DMCreateCoordinateDM_Plex(DM dm, DM *cdm);
840: PETSC_INTERN PetscErrorCode DMCreateCellCoordinateDM_Plex(DM dm, DM *cdm);
841: PETSC_INTERN PetscErrorCode DMCreateCoordinateField_Plex(DM dm, DMField *field);
842: PETSC_INTERN PetscErrorCode DMClone_Plex(DM dm, DM *newdm);
843: PETSC_INTERN PetscErrorCode DMSetUp_Plex(DM dm);
844: PETSC_INTERN PetscErrorCode DMDestroy_Plex(DM dm);
845: PETSC_INTERN PetscErrorCode DMView_Plex(DM dm, PetscViewer viewer);
846: PETSC_INTERN PetscErrorCode DMLoad_Plex(DM dm, PetscViewer viewer);
847: PETSC_INTERN PetscErrorCode DMCreateSubDM_Plex(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm);
848: PETSC_INTERN PetscErrorCode DMCreateSuperDM_Plex(DM dms[], PetscInt len, IS **is, DM *superdm);
849: PETSC_INTERN PetscErrorCode DMCreateDomainDecompositionScatters_Plex(DM, PetscInt, DM *, VecScatter **, VecScatter **, VecScatter **);
850: PETSC_INTERN PetscErrorCode DMCreateDomainDecomposition_Plex(DM, PetscInt *, char ***, IS **, IS **, DM **);
851: PETSC_INTERN PetscErrorCode DMCreateSectionPermutation_Plex(DM dm, IS *permutation, PetscBT *blockStarts);
852: PETSC_INTERN PetscErrorCode DMPlexCellUnsplitVertices_Internal(DM, PetscInt, DMPolytopeType, PetscInt *);
854: // Coordinate mapping functions
855: PETSC_INTERN void coordMap_identity(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
856: PETSC_INTERN void coordMap_rotate(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
857: PETSC_INTERN void coordMap_shear(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
858: PETSC_INTERN void coordMap_flare(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
859: PETSC_INTERN void coordMap_annulus(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
860: PETSC_INTERN void coordMap_shell(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
861: PETSC_INTERN void coordMap_sinusoid(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
862: PETSC_INTERN void coordMap_torus(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
864: PETSC_INTERN PetscErrorCode DMSnapToGeomModel_EGADS(DM, PetscInt, PetscInt, const PetscScalar[], PetscScalar[]);
866: // FIXME: DM with Attached CAD Models (STEP, IGES, BRep, EGADS, EGADSlite)
868: // Coordinate <-> Reference mapping functions
869: PETSC_INTERN PetscErrorCode DMPlexCoordinatesToReference_FE(DM, PetscFE, PetscInt, PetscInt, const PetscReal[], PetscReal[], Vec, PetscInt, PetscInt, PetscInt, PetscReal *);
870: PETSC_INTERN PetscErrorCode DMPlexReferenceToCoordinates_FE(DM, PetscFE, PetscInt, PetscInt, const PetscReal[], PetscReal[], Vec, PetscInt, PetscInt);