Actual source code: petscdmswarm.h
1: #pragma once
3: #include <petscdm.h>
4: #include <petscdt.h>
6: /* MANSEC = DM */
7: /* SUBMANSEC = DMSwarm */
9: /*S
10: DMSwarmDataField - Opaque handle to a single named field of particle data stored inside a `DMSwarmDataBucket`
12: Level: developer
14: Note:
15: Each `DMSwarmDataField` records the field name, the per-particle data type and a contiguous storage block whose length matches the number of particles in the parent `DMSwarmDataBucket`.
17: .seealso: `DMSWARM`, `DMSwarmDataBucket`, `DMSwarmDataBucketGetDMSwarmDataFieldByName()`, `DMSwarmDataFieldGetEntries()`
18: S*/
19: typedef struct _p_DMSwarmDataField *DMSwarmDataField;
21: /*S
22: DMSwarmDataBucket - Opaque internal container that groups all of a `DMSWARM`'s per-particle fields (`DMSwarmDataField`) and the current particle count
24: Level: developer
26: Note:
27: Used internally by `DMSWARM` to store the particle state; user code normally interacts with the
28: `DMSWARM` API rather than this container directly.
30: .seealso: `DMSWARM`, `DMSwarmDataField`, `DMSwarmRegisterPetscDatatypeField()`
31: S*/
32: typedef struct _p_DMSwarmDataBucket *DMSwarmDataBucket;
34: /*S
35: DMSwarmSort - PETSc object for sorting `DMSWARM` particles into `DM` cells. Sort particles by their background cell index for fast cell-to-particle lookups.
37: Level: developer
39: .seealso: [](ch_dmbase), `DM`, `DMSWARM`, `DMSwarmSortGetAccess()`, `DMSwarmSortRestoreAccess()`, `DMSwarmSortGetIsValid()`, `DMSwarmSortCreate()`, `DMSwarmSortDestroy()`
40: S*/
41: typedef struct _p_DMSwarmSort *DMSwarmSort;
42: PETSC_EXTERN PetscClassId DMSWARMSORT_CLASSID;
44: /*E
45: DMSwarmType - Defines the type of `DMSWARM`
47: Values:
48: + `DMSWARM_BASIC` - defines N entries of varied data-types which the user may register.
49: - `DMSWARM_PIC` - suitable for particle-in-cell methods. Configured as `DMSWARM_PIC`, the swarm will be aware of, another `DM` which serves as the background mesh.
51: Fields specific to particle-in-cell methods are registered by default. These include spatial coordinates, a unique identifier, a cell index and an index for
52: the owning rank. The background mesh will (by default) define the spatial decomposition of the points defined in the swarm. `DMSWARM_PIC` provides support
53: for particle-in-cell operations such as defining initial point coordinates, communicating particles between sub-domains, projecting particle data fields on to the mesh.
55: Level: beginner
57: .seealso: [](ch_dmbase), `DMSWARM`, `DMSwarmSetType()`
58: E*/
59: typedef enum {
60: DMSWARM_BASIC,
61: DMSWARM_PIC
62: } DMSwarmType;
63: PETSC_EXTERN const char *DMSwarmTypeNames[];
65: typedef enum {
66: DMSWARM_MIGRATE_BASIC,
67: DMSWARM_MIGRATE_DMCELLNSCATTER,
68: DMSWARM_MIGRATE_DMCELLEXACT,
69: DMSWARM_MIGRATE_USER
70: } DMSwarmMigrateType;
71: PETSC_EXTERN const char *DMSwarmMigrateTypeNames[];
73: typedef enum {
74: DMSWARM_COLLECT_BASIC,
75: DMSWARM_COLLECT_DMDABOUNDINGBOX,
76: DMSWARM_COLLECT_GENERAL,
77: DMSWARM_COLLECT_USER
78: } DMSwarmCollectType;
79: PETSC_EXTERN const char *DMSwarmCollectTypeNames[];
81: typedef enum {
82: DMSWARM_REMAP_NONE = 0,
83: DMSWARM_REMAP_PFAK = 1,
84: DMSWARM_REMAP_COLELLA = 2
85: } DMSwarmRemapType;
86: PETSC_EXTERN const char *DMSwarmRemapTypeNames[];
88: /*E
89: DMSwarmPICLayoutType - Defines the method used to define particle coordinates within each cell. The layouts are constructured using the reference cell geometry
91: Values:
92: + `DMSWARMPIC_LAYOUT_REGULAR` - defines points on a regular ijk mesh. In this case
93: the `fill_param` argument of `DMSwarmInsertPointsUsingCellDM()` defines the number of points in each spatial direction.
94: . `DMSWARMPIC_LAYOUT_GAUSS` - defines points using an npoint Gauss-Legendre tensor product quadrature rule. In this case
95: the `fill_param` argument of `DMSwarmInsertPointsUsingCellDM()` defines the number of quadrature points in each spatial direction.
96: - `DMSWARMPIC_LAYOUT_SUBDIVISION` - defines points on the centroid of a sub-divided reference cell. In this case
97: the `fill_param` argument of `DMSwarmInsertPointsUsingCellDM()` defines the number times the reference cell is sub-divided.
99: Level: beginner
101: .seealso: [](ch_dmbase), `DMSWARM`, `DM`, `DMSwarmInsertPointsUsingCellDM()`
102: E*/
103: typedef enum {
104: DMSWARMPIC_LAYOUT_REGULAR,
105: DMSWARMPIC_LAYOUT_GAUSS,
106: DMSWARMPIC_LAYOUT_SUBDIVISION
107: } DMSwarmPICLayoutType;
109: /*S
110: DMSwarmCellDM - PETSc object for defining a background `DM` for the `DMSWARM` particles
112: Level: intermediate
114: .seealso: [](ch_dmbase), `DM`, `DMSwarmAddCellDM()`, `DMSwarmCellDMCreate()`
115: S*/
116: typedef struct _p_DMSwarmCellDM *DMSwarmCellDM;
117: PETSC_EXTERN PetscClassId DMSWARMCELLDM_CLASSID;
119: PETSC_EXTERN const char DMSwarmField_pid[];
120: PETSC_EXTERN const char DMSwarmField_rank[];
121: PETSC_EXTERN const char DMSwarmPICField_coor[];
123: PETSC_EXTERN PetscErrorCode DMSwarmCreateGlobalVectorFromField(DM, const char[], Vec *);
124: PETSC_EXTERN PetscErrorCode DMSwarmDestroyGlobalVectorFromField(DM, const char[], Vec *);
125: PETSC_EXTERN PetscErrorCode DMSwarmCreateLocalVectorFromField(DM, const char[], Vec *);
126: PETSC_EXTERN PetscErrorCode DMSwarmDestroyLocalVectorFromField(DM, const char[], Vec *);
127: PETSC_EXTERN PetscErrorCode DMSwarmCreateGlobalVectorFromFields(DM, PetscInt, const char *[], Vec *);
128: PETSC_EXTERN PetscErrorCode DMSwarmDestroyGlobalVectorFromFields(DM, PetscInt, const char *[], Vec *);
129: PETSC_EXTERN PetscErrorCode DMSwarmCreateLocalVectorFromFields(DM, PetscInt, const char *[], Vec *);
130: PETSC_EXTERN PetscErrorCode DMSwarmDestroyLocalVectorFromFields(DM, PetscInt, const char *[], Vec *);
132: PETSC_EXTERN PetscErrorCode DMSwarmInitializeFieldRegister(DM);
133: PETSC_EXTERN PetscErrorCode DMSwarmFinalizeFieldRegister(DM);
134: PETSC_EXTERN PetscErrorCode DMSwarmSetLocalSizes(DM, PetscInt, PetscInt);
135: PETSC_EXTERN PetscErrorCode DMSwarmRegisterPetscDatatypeField(DM, const char[], PetscInt, PetscDataType);
136: PETSC_EXTERN PetscErrorCode DMSwarmRegisterUserStructField(DM, const char[], size_t);
137: PETSC_EXTERN PetscErrorCode DMSwarmRegisterUserDatatypeField(DM, const char[], size_t, PetscInt);
138: PETSC_EXTERN PetscErrorCode DMSwarmGetField(DM, const char[], PetscInt *, PetscDataType *, void **);
139: PETSC_EXTERN PetscErrorCode DMSwarmRestoreField(DM, const char[], PetscInt *, PetscDataType *, void **);
140: PETSC_EXTERN PetscErrorCode DMSwarmGetFieldInfo(DM, const char[], PetscInt *, PetscDataType *);
142: PETSC_EXTERN PetscErrorCode DMSwarmVectorDefineField(DM, const char[]);
143: PETSC_EXTERN PetscErrorCode DMSwarmVectorDefineFields(DM, PetscInt, const char *[]);
144: PETSC_EXTERN PetscErrorCode DMSwarmVectorGetField(DM, PetscInt *, const char **[]);
146: PETSC_EXTERN PetscErrorCode DMSwarmAddPoint(DM);
147: PETSC_EXTERN PetscErrorCode DMSwarmAddNPoints(DM, PetscInt);
148: PETSC_EXTERN PetscErrorCode DMSwarmRemovePoint(DM);
149: PETSC_EXTERN PetscErrorCode DMSwarmRemovePointAtIndex(DM, PetscInt);
150: PETSC_EXTERN PetscErrorCode DMSwarmCopyPoint(DM, PetscInt, PetscInt);
152: PETSC_EXTERN PetscErrorCode DMSwarmGetLocalSize(DM, PetscInt *);
153: PETSC_EXTERN PetscErrorCode DMSwarmGetSize(DM, PetscInt *);
154: PETSC_EXTERN PetscErrorCode DMSwarmGetMigrateType(DM, DMSwarmMigrateType *);
155: PETSC_EXTERN PetscErrorCode DMSwarmSetMigrateType(DM, DMSwarmMigrateType);
156: PETSC_EXTERN PetscErrorCode DMSwarmMigrate(DM, PetscBool);
158: PETSC_EXTERN PetscErrorCode DMSwarmCollectViewCreate(DM);
159: PETSC_EXTERN PetscErrorCode DMSwarmCollectViewDestroy(DM);
160: PETSC_EXTERN PetscErrorCode DMSwarmSetCellDM(DM, DM);
161: PETSC_EXTERN PetscErrorCode DMSwarmGetCellDM(DM, DM *);
162: PETSC_EXTERN PetscErrorCode DMSwarmGetCellDMByName(DM, const char[], DMSwarmCellDM *);
163: PETSC_EXTERN PetscErrorCode DMSwarmGetCellDMNames(DM, PetscInt *, const char **[]);
164: PETSC_EXTERN PetscErrorCode DMSwarmSetCellDMActive(DM, const char[]);
165: PETSC_EXTERN PetscErrorCode DMSwarmGetCellDMActive(DM, DMSwarmCellDM *);
166: PETSC_EXTERN PetscErrorCode DMSwarmAddCellDM(DM, DMSwarmCellDM);
168: PETSC_EXTERN PetscErrorCode DMSwarmGetType(DM, DMSwarmType *);
169: PETSC_EXTERN PetscErrorCode DMSwarmSetType(DM, DMSwarmType);
171: PETSC_EXTERN PetscErrorCode DMSwarmSetPointsUniformCoordinates(DM, PetscReal *, PetscReal *, PetscInt *, InsertMode);
172: PETSC_EXTERN PetscErrorCode DMSwarmSetPointCoordinates(DM, PetscInt, PetscReal *, PetscBool, InsertMode);
173: PETSC_EXTERN PetscErrorCode DMSwarmInsertPointsUsingCellDM(DM, DMSwarmPICLayoutType, PetscInt);
174: PETSC_EXTERN PetscErrorCode DMSwarmSetPointCoordinatesCellwise(DM, PetscInt, PetscReal *);
175: PETSC_EXTERN PetscErrorCode DMSwarmSetPointCoordinatesRandom(DM, PetscInt);
176: PETSC_EXTERN PetscErrorCode DMSwarmViewFieldsXDMF(DM, const char *, PetscInt, const char *[]);
177: PETSC_EXTERN PetscErrorCode DMSwarmViewXDMF(DM, const char *);
179: PETSC_EXTERN PetscErrorCode DMSwarmSortDestroy(DMSwarmSort *);
180: PETSC_EXTERN PetscErrorCode DMSwarmSortView(DMSwarmSort, PetscViewer);
181: PETSC_EXTERN PetscErrorCode DMSwarmSortGetAccess(DM);
182: PETSC_EXTERN PetscErrorCode DMSwarmSortRestoreAccess(DM);
183: PETSC_EXTERN PetscErrorCode DMSwarmSortGetPointsPerCell(DM, PetscInt, PetscInt *, PetscInt **);
184: PETSC_EXTERN PetscErrorCode DMSwarmSortRestorePointsPerCell(DM, PetscInt, PetscInt *, PetscInt **);
185: PETSC_EXTERN PetscErrorCode DMSwarmSortGetNumberOfPointsPerCell(DM, PetscInt, PetscInt *);
186: PETSC_EXTERN PetscErrorCode DMSwarmSortGetIsValid(DM, PetscBool *);
187: PETSC_EXTERN PetscErrorCode DMSwarmSortGetSizes(DM, PetscInt *, PetscInt *);
189: PETSC_EXTERN PetscErrorCode DMSwarmCreateMassMatrixSquare(DM, DM, Mat *);
191: PETSC_EXTERN PetscErrorCode DMSwarmGetCellSwarm(DM, PetscInt, DM);
192: PETSC_EXTERN PetscErrorCode DMSwarmRestoreCellSwarm(DM, PetscInt, DM);
193: PETSC_EXTERN PetscErrorCode DMSwarmGetNumSpecies(DM, PetscInt *);
194: PETSC_EXTERN PetscErrorCode DMSwarmSetNumSpecies(DM, PetscInt);
195: PETSC_EXTERN PetscErrorCode DMSwarmGetCoordinateFunction(DM, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *));
196: PETSC_EXTERN PetscErrorCode DMSwarmSetCoordinateFunction(DM, PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *));
197: PETSC_EXTERN PetscErrorCode DMSwarmGetVelocityFunction(DM, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *));
198: PETSC_EXTERN PetscErrorCode DMSwarmSetVelocityFunction(DM, PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *));
199: PETSC_EXTERN PetscErrorCode DMSwarmComputeLocalSize(DM, PetscInt, PetscProbFn *);
200: PETSC_EXTERN PetscErrorCode DMSwarmComputeLocalSizeFromOptions(DM);
201: PETSC_EXTERN PetscErrorCode DMSwarmInitializeCoordinates(DM);
202: PETSC_EXTERN PetscErrorCode DMSwarmInitializeVelocities(DM, PetscProbFn *, const PetscReal[]);
203: PETSC_EXTERN PetscErrorCode DMSwarmInitializeVelocitiesFromOptions(DM, const PetscReal[]);
205: PETSC_EXTERN PetscErrorCode DMSwarmCreatePointPerCellCount(DM, PetscInt *, PetscInt **);
207: // Interface to internal storage
208: PETSC_EXTERN PetscErrorCode DMSwarmDataFieldGetEntries(const DMSwarmDataField, void **);
209: PETSC_EXTERN PetscErrorCode DMSwarmDataFieldRestoreEntries(const DMSwarmDataField, void **);
210: PETSC_EXTERN PetscErrorCode DMSwarmDataBucketGetDMSwarmDataFieldByName(DMSwarmDataBucket, const char[], DMSwarmDataField *);
211: PETSC_EXTERN PetscErrorCode DMSwarmDataBucketGetDMSwarmDataFieldIdByName(DMSwarmDataBucket, const char[], PetscInt *);
212: PETSC_EXTERN PetscErrorCode DMSwarmDataBucketQueryDMSwarmDataFieldByName(DMSwarmDataBucket, const char[], PetscBool *);
214: PETSC_EXTERN PetscErrorCode DMSwarmDuplicate(DM, DM *);
215: PETSC_EXTERN PetscErrorCode DMSwarmRemap(DM);
216: PETSC_EXTERN PetscErrorCode DMSwarmReplace(DM, DM *);
218: PETSC_EXTERN PetscErrorCode DMSwarmComputeMoments(DM, const char[], const char[], PetscReal[]);
220: PETSC_EXTERN PetscErrorCode DMSwarmCellDMCreate(DM, PetscInt, const char *[], PetscInt, const char *[], DMSwarmCellDM *);
221: PETSC_EXTERN PetscErrorCode DMSwarmCellDMDestroy(DMSwarmCellDM *);
222: PETSC_EXTERN PetscErrorCode DMSwarmCellDMView(DMSwarmCellDM, PetscViewer);
223: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetDM(DMSwarmCellDM, DM *);
224: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetFields(DMSwarmCellDM, PetscInt *, const char **[]);
225: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetCoordinateFields(DMSwarmCellDM, PetscInt *, const char **[]);
226: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetCellID(DMSwarmCellDM, const char *[]);
227: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetSort(DMSwarmCellDM, DMSwarmSort *);
228: PETSC_EXTERN PetscErrorCode DMSwarmCellDMSetSort(DMSwarmCellDM, DMSwarmSort);
229: PETSC_EXTERN PetscErrorCode DMSwarmCellDMGetBlockSize(DMSwarmCellDM, DM, PetscInt *);
231: PETSC_EXTERN PetscErrorCode DMSwarmPreallocateMassMatrix(DM, DM, Mat, PetscInt *, PetscInt *, PetscCtx);
232: PETSC_EXTERN PetscErrorCode DMSwarmFillMassMatrix(DM, DM, Mat, PetscInt, PetscInt, PetscBool, PetscInt, const PetscInt[], PetscReal *[], PetscCtx);