Actual source code: ex2.c
1: static char help[] = "Runaway electron model with Landau collision operator\n\n";
3: #include <petscdmplex.h>
4: #include <petsclandau.h>
5: #include <petscts.h>
6: #include <petscds.h>
7: #include <petscdmcomposite.h>
8: #include <petsc/private/petscimpl.h>
10: #if defined(PETSC_HAVE_CUDA_NVTX)
11: #if PETSC_PKG_CUDA_VERSION_GE(10, 0, 0)
12: #include <nvtx3/nvToolsExt.h>
13: #else
14: #include <nvToolsExt.h>
15: #endif
16: #endif
18: /* data for runaway electron model */
19: typedef struct REctx_struct {
20: PetscErrorCode (*test)(TS, Vec, PetscInt, PetscReal, PetscBool, LandauCtx *, struct REctx_struct *);
21: PetscErrorCode (*impuritySrcRate)(PetscReal, PetscReal *, LandauCtx *);
22: PetscErrorCode (*E)(Vec, Vec, PetscInt, PetscReal, LandauCtx *, PetscReal *);
23: PetscReal T_cold; /* temperature of newly ionized electrons and impurity ions */
24: PetscReal ion_potential; /* ionization potential of impurity */
25: PetscReal Ne_ion; /* effective number of electrons shed in ioization of impurity */
26: PetscReal Ez_initial;
27: PetscReal L; /* inductance */
28: Vec X_0;
29: PetscInt imp_idx; /* index for impurity ionizing sink */
30: PetscReal pulse_start;
31: PetscReal pulse_width;
32: PetscReal pulse_rate;
33: PetscReal current_rate;
34: PetscInt plotIdx;
35: PetscInt plotStep;
36: PetscInt idx; /* cache */
37: PetscReal j; /* cache */
38: PetscReal plotDt;
39: PetscBool plotting;
40: PetscBool use_spitzer_eta;
41: PetscInt print_period;
42: PetscInt grid_view_idx;
43: } REctx;
45: static const PetscReal kev_joul = 6.241506479963235e+15; /* 1/1000e */
47: #define RE_CUT 3.
48: /* < v, u_re * v * q > */
49: static void f0_j_re(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
50: {
51: PetscReal n_e = PetscRealPart(u[0]);
52: if (dim == 2) {
53: if (x[1] > RE_CUT || x[1] < -RE_CUT) { /* simply a cutoff for REs. v_|| > 3 v(T_e) */
54: *f0 = n_e * 2. * PETSC_PI * x[0] * x[1] * constants[0]; /* n * r * v_|| * q */
55: } else {
56: *f0 = 0;
57: }
58: } else {
59: if (x[2] > RE_CUT || x[2] < -RE_CUT) { /* simply a cutoff for REs. v_|| > 3 v(T_e) */
60: *f0 = n_e * x[2] * constants[0];
61: } else {
62: *f0 = 0;
63: }
64: }
65: }
67: /* sum < v, u*v*q > */
68: static void f0_jz_sum(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar q[], PetscScalar *f0)
69: {
70: PetscInt ii;
71: f0[0] = 0;
72: if (dim == 2) {
73: for (ii = 0; ii < Nf; ii++) f0[0] += u[ii] * 2. * PETSC_PI * x[0] * x[1] * q[ii]; /* n * r * v_|| * q * v_0 */
74: } else {
75: for (ii = 0; ii < Nf; ii++) f0[0] += u[ii] * x[2] * q[ii]; /* n * v_|| * q * v_0 */
76: }
77: }
79: /* < v, n_e > */
80: static void f0_n(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
81: {
82: PetscInt ii = (PetscInt)PetscRealPart(constants[0]);
83: if (dim == 2) f0[0] = 2. * PETSC_PI * x[0] * u[ii];
84: else f0[0] = u[ii];
85: }
87: /* < v, n_e v_|| > */
88: static void f0_vz(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
89: {
90: PetscInt ii = (PetscInt)PetscRealPart(constants[0]);
91: if (dim == 2) f0[0] = u[ii] * 2. * PETSC_PI * x[0] * x[1]; /* n r v_|| */
92: else f0[0] = u[ii] * x[2]; /* n v_|| */
93: }
95: /* < v, n_e (v-shift) > */
96: static void f0_ve_shift(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
97: {
98: PetscReal vz = numConstants > 0 ? PetscRealPart(constants[0]) : 0;
99: if (dim == 2) *f0 = u[0] * 2. * PETSC_PI * x[0] * PetscSqrtReal(x[0] * x[0] + (x[1] - vz) * (x[1] - vz)); /* n r v */
100: else {
101: *f0 = u[0] * PetscSqrtReal(x[0] * x[0] + x[1] * x[1] + (x[2] - vz) * (x[2] - vz)); /* n v */
102: }
103: }
105: /* CalculateE - Calculate the electric field */
106: /* T -- Electron temperature */
107: /* n -- Electron density */
108: /* lnLambda -- */
109: /* eps0 -- */
110: /* E -- output E, input \hat E */
111: static PetscReal CalculateE(PetscReal Tev, PetscReal n, PetscReal lnLambda, PetscReal eps0, PetscReal *E)
112: {
113: PetscReal c, e, m;
115: PetscFunctionBegin;
116: c = 299792458.0;
117: e = 1.602176e-19;
118: m = 9.10938e-31;
119: if (1) {
120: double Ec, Ehat = *E, betath = PetscSqrtReal(2 * Tev * e / (m * c * c)), j0 = Ehat * 7 / (PetscSqrtReal(2) * 2) * PetscPowReal(betath, 3) * n * e * c;
121: Ec = n * lnLambda * PetscPowReal(e, 3) / (4 * PETSC_PI * PetscPowReal(eps0, 2) * m * c * c);
122: *E = Ec;
123: PetscCall(PetscPrintf(PETSC_COMM_WORLD, "CalculateE j0=%g Ec = %g\n", j0, Ec));
124: } else {
125: PetscReal Ed, vth;
126: vth = PetscSqrtReal(8 * Tev * e / (m * PETSC_PI));
127: Ed = n * lnLambda * PetscPowReal(e, 3) / (4 * PETSC_PI * PetscPowReal(eps0, 2) * m * vth * vth);
128: *E = Ed;
129: }
130: PetscFunctionReturn(PETSC_SUCCESS);
131: }
133: static PetscReal Spitzer(PetscReal m_e, PetscReal e, PetscReal Z, PetscReal epsilon0, PetscReal lnLam, PetscReal kTe_joules)
134: {
135: PetscReal Fz = (1 + 1.198 * Z + 0.222 * Z * Z) / (1 + 2.966 * Z + 0.753 * Z * Z), eta;
136: eta = Fz * 4. / 3. * PetscSqrtReal(2. * PETSC_PI) * Z * PetscSqrtReal(m_e) * PetscSqr(e) * lnLam * PetscPowReal(4 * PETSC_PI * epsilon0, -2.) * PetscPowReal(kTe_joules, -1.5);
137: return eta;
138: }
140: static PetscErrorCode testNone(TS ts, Vec X, PetscInt stepi, PetscReal time, PetscBool islast, LandauCtx *ctx, REctx *rectx)
141: {
142: PetscFunctionBeginUser;
143: PetscFunctionReturn(PETSC_SUCCESS);
144: }
146: static PetscErrorCode testSpitzer(TS ts, Vec X, PetscInt stepi, PetscReal time, PetscBool islast, LandauCtx *ctx, REctx *rectx)
147: {
148: PetscInt ii, nDMs;
149: PetscDS prob;
150: static PetscReal old_ratio = 1e10;
151: TSConvergedReason reason;
152: PetscReal J, J_re, spit_eta, Te_kev = 0, E, ratio, Z, n_e, v, v2;
153: PetscScalar user[2] = {0., ctx->charges[0]}, q[LANDAU_MAX_SPECIES], tt[LANDAU_MAX_SPECIES], vz;
154: PetscReal dt;
155: DM pack, plexe = ctx->plex[0], plexi = (ctx->num_grids == 1) ? NULL : ctx->plex[1];
156: Vec *XsubArray;
158: PetscFunctionBeginUser;
159: PetscCheck(ctx->num_species == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "ctx->num_species %" PetscInt_FMT " != 2", ctx->num_species);
160: PetscCall(VecGetDM(X, &pack));
161: PetscCheck(pack, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no DM");
162: PetscCall(DMCompositeGetNumberDM(pack, &nDMs));
163: PetscCheck(nDMs == ctx->num_grids * ctx->batch_sz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nDMs != ctx->num_grids*ctx->batch_sz %" PetscInt_FMT " != %" PetscInt_FMT, nDMs, ctx->num_grids * ctx->batch_sz);
164: PetscCall(PetscMalloc(sizeof(*XsubArray) * nDMs, &XsubArray));
165: PetscCall(DMCompositeGetAccessArray(pack, X, nDMs, NULL, XsubArray)); // read only
166: PetscCall(TSGetTimeStep(ts, &dt));
167: /* get current for each grid */
168: for (ii = 0; ii < ctx->num_species; ii++) q[ii] = ctx->charges[ii];
169: PetscCall(DMGetDS(plexe, &prob));
170: PetscCall(PetscDSSetConstants(prob, 2, &q[0]));
171: PetscCall(PetscDSSetObjective(prob, 0, &f0_jz_sum));
172: PetscCall(DMPlexComputeIntegralFEM(plexe, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 0)], tt, NULL));
173: J = -ctx->n_0 * ctx->v_0 * PetscRealPart(tt[0]);
174: if (plexi) { // add first (only) ion
175: PetscCall(DMGetDS(plexi, &prob));
176: PetscCall(PetscDSSetConstants(prob, 1, &q[1]));
177: PetscCall(PetscDSSetObjective(prob, 0, &f0_jz_sum));
178: PetscCall(DMPlexComputeIntegralFEM(plexi, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 1)], tt, NULL));
179: J += -ctx->n_0 * ctx->v_0 * PetscRealPart(tt[0]);
180: }
181: /* get N_e */
182: PetscCall(DMGetDS(plexe, &prob));
183: PetscCall(PetscDSSetConstants(prob, 1, user));
184: PetscCall(PetscDSSetObjective(prob, 0, &f0_n));
185: PetscCall(DMPlexComputeIntegralFEM(plexe, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 0)], tt, NULL));
186: n_e = PetscRealPart(tt[0]) * ctx->n_0;
187: /* Z */
188: Z = -ctx->charges[1] / ctx->charges[0];
189: /* remove drift */
190: if (0) {
191: user[0] = 0; // electrons
192: PetscCall(DMGetDS(plexe, &prob));
193: PetscCall(PetscDSSetConstants(prob, 1, user));
194: PetscCall(PetscDSSetObjective(prob, 0, &f0_vz));
195: PetscCall(DMPlexComputeIntegralFEM(plexe, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 0)], tt, NULL));
196: vz = ctx->n_0 * PetscRealPart(tt[0]) / n_e; /* non-dimensional */
197: } else vz = 0;
198: /* thermal velocity */
199: PetscCall(DMGetDS(plexe, &prob));
200: PetscCall(PetscDSSetConstants(prob, 1, &vz));
201: PetscCall(PetscDSSetObjective(prob, 0, &f0_ve_shift));
202: PetscCall(DMPlexComputeIntegralFEM(plexe, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 0)], tt, NULL));
203: v = ctx->n_0 * ctx->v_0 * PetscRealPart(tt[0]) / n_e; /* remove number density to get velocity */
204: v2 = PetscSqr(v); /* use real space: m^2 / s^2 */
205: Te_kev = (v2 * ctx->masses[0] * PETSC_PI / 8) * kev_joul; /* temperature in kev */
206: spit_eta = Spitzer(ctx->masses[0], -ctx->charges[0], Z, ctx->epsilon0, ctx->lambdas[0][1], Te_kev / kev_joul); /* kev --> J (kT) */
207: if (0) {
208: PetscCall(DMGetDS(plexe, &prob));
209: PetscCall(PetscDSSetConstants(prob, 1, q));
210: PetscCall(PetscDSSetObjective(prob, 0, &f0_j_re));
211: PetscCall(DMPlexComputeIntegralFEM(plexe, XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, 0)], tt, NULL));
212: } else tt[0] = 0;
213: J_re = -ctx->n_0 * ctx->v_0 * PetscRealPart(tt[0]);
214: PetscCall(DMCompositeRestoreAccessArray(pack, X, nDMs, NULL, XsubArray)); // read only
215: PetscCall(PetscFree(XsubArray));
217: if (rectx->use_spitzer_eta) {
218: E = ctx->Ez = spit_eta * (rectx->j - J_re);
219: } else {
220: E = ctx->Ez; /* keep real E */
221: rectx->j = J; /* cache */
222: }
224: ratio = E / J / spit_eta;
225: if (stepi > 10 && !rectx->use_spitzer_eta && (old_ratio - ratio < 1.e-6)) {
226: rectx->pulse_start = time + 0.98 * dt;
227: rectx->use_spitzer_eta = PETSC_TRUE;
228: }
229: PetscCall(TSGetConvergedReason(ts, &reason));
230: PetscCall(TSGetConvergedReason(ts, &reason));
231: if (rectx->plotting || stepi == 0 || reason || rectx->pulse_start == time + 0.98 * dt) {
232: PetscCall(PetscPrintf(ctx->comm, "testSpitzer: %4" PetscInt_FMT ") time=%11.4e n_e= %10.3e E= %10.3e J= %10.3e J_re= %10.3e %.3g%% Te_kev= %10.3e Z_eff=%g E/J to eta ratio= %g (diff=%g) %s %s spit_eta=%g\n", stepi, (double)time,
233: (double)(n_e / ctx->n_0), (double)ctx->Ez, (double)J, (double)J_re, (double)(100 * J_re / J), (double)Te_kev, (double)Z, (double)ratio, (double)(old_ratio - ratio), rectx->use_spitzer_eta ? "using Spitzer eta*J E" : "constant E", rectx->pulse_start != time + 0.98 * dt ? "normal" : "transition", (double)spit_eta));
234: PetscCheck(rectx->pulse_start != (time + 0.98 * dt), PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Spitzer complete ratio=%g", (double)ratio);
235: }
236: old_ratio = ratio;
237: PetscFunctionReturn(PETSC_SUCCESS);
238: }
240: static const double ppp = 2;
241: static void f0_0_diff_lp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
242: {
243: LandauCtx *ctx = (LandauCtx *)constants;
244: REctx *rectx = (REctx *)ctx->data;
245: PetscInt ii = rectx->idx, i;
246: const PetscReal kT_m = ctx->k * ctx->thermal_temps[ii] / ctx->masses[ii]; /* kT/m */
247: const PetscReal n = ctx->n[ii];
248: PetscReal diff, f_maxwell, v2 = 0, theta = 2 * kT_m / (ctx->v_0 * ctx->v_0); /* theta = 2kT/mc^2 */
249: for (i = 0; i < dim; ++i) v2 += x[i] * x[i];
250: f_maxwell = n * PetscPowReal(PETSC_PI * theta, -1.5) * (PetscExpReal(-v2 / theta));
251: diff = 2. * PETSC_PI * x[0] * (PetscRealPart(u[ii]) - f_maxwell);
252: f0[0] = PetscPowReal(diff, ppp);
253: }
255: static void f0_0_maxwellian_lp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *f0)
256: {
257: LandauCtx *ctx = (LandauCtx *)constants;
258: REctx *rectx = (REctx *)ctx->data;
259: PetscInt ii = rectx->idx, i;
260: const PetscReal kT_m = ctx->k * ctx->thermal_temps[ii] / ctx->masses[ii]; /* kT/m */
261: const PetscReal n = ctx->n[ii];
262: PetscReal f_maxwell, v2 = 0, theta = 2 * kT_m / (ctx->v_0 * ctx->v_0); /* theta = 2kT/mc^2 */
263: for (i = 0; i < dim; ++i) v2 += x[i] * x[i];
264: f_maxwell = 2. * PETSC_PI * x[0] * n * PetscPowReal(PETSC_PI * theta, -1.5) * (PetscExpReal(-v2 / theta));
265: f0[0] = PetscPowReal(f_maxwell, ppp);
266: }
268: static PetscErrorCode testStable(TS ts, Vec X, PetscInt stepi, PetscReal time, PetscBool islast, LandauCtx *ctx, REctx *rectx)
269: {
270: PetscDS prob;
271: Vec X2;
272: PetscReal ediff, idiff = 0, lpm0, lpm1 = 1;
273: PetscScalar tt[LANDAU_MAX_SPECIES];
274: DM dm, plex = ctx->plex[0];
276: PetscFunctionBeginUser;
277: PetscCall(VecGetDM(X, &dm));
278: PetscCall(DMGetDS(plex, &prob));
279: PetscCall(VecDuplicate(X, &X2));
280: PetscCall(VecCopy(X, X2));
281: if (!rectx->X_0) {
282: PetscCall(VecDuplicate(X, &rectx->X_0));
283: PetscCall(VecCopy(X, rectx->X_0));
284: }
285: PetscCall(VecAXPY(X, -1.0, rectx->X_0));
286: PetscCall(PetscDSSetConstants(prob, sizeof(LandauCtx) / sizeof(PetscScalar), (PetscScalar *)ctx));
287: rectx->idx = 0;
288: PetscCall(PetscDSSetObjective(prob, 0, &f0_0_diff_lp));
289: PetscCall(DMPlexComputeIntegralFEM(plex, X2, tt, NULL));
290: ediff = PetscPowReal(PetscRealPart(tt[0]), 1. / ppp);
291: PetscCall(PetscDSSetObjective(prob, 0, &f0_0_maxwellian_lp));
292: PetscCall(DMPlexComputeIntegralFEM(plex, X2, tt, NULL));
293: lpm0 = PetscPowReal(PetscRealPart(tt[0]), 1. / ppp);
294: if (ctx->num_species > 1) {
295: rectx->idx = 1;
296: PetscCall(PetscDSSetObjective(prob, 0, &f0_0_diff_lp));
297: PetscCall(DMPlexComputeIntegralFEM(plex, X2, tt, NULL));
298: idiff = PetscPowReal(PetscRealPart(tt[0]), 1. / ppp);
299: PetscCall(PetscDSSetObjective(prob, 0, &f0_0_maxwellian_lp));
300: PetscCall(DMPlexComputeIntegralFEM(plex, X2, tt, NULL));
301: lpm1 = PetscPowReal(PetscRealPart(tt[0]), 1. / ppp);
302: }
303: PetscCall(PetscPrintf(PETSC_COMM_WORLD, "%s %" PetscInt_FMT ") time=%10.3e n-%d norm electrons/max=%20.13e ions/max=%20.13e\n", "----", stepi, (double)time, (int)ppp, (double)(ediff / lpm0), (double)(idiff / lpm1)));
304: /* view */
305: PetscCall(VecCopy(X2, X));
306: PetscCall(VecDestroy(&X2));
307: if (islast) {
308: PetscCall(VecDestroy(&rectx->X_0));
309: rectx->X_0 = NULL;
310: }
311: PetscFunctionReturn(PETSC_SUCCESS);
312: }
314: static PetscErrorCode EInduction(Vec X, Vec X_t, PetscInt step, PetscReal time, LandauCtx *ctx, PetscReal *a_E)
315: {
316: REctx *rectx = (REctx *)ctx->data;
317: PetscInt ii;
318: DM dm, plex;
319: PetscScalar tt[LANDAU_MAX_SPECIES], qv0[LANDAU_MAX_SPECIES];
320: PetscReal dJ_dt;
321: PetscDS prob;
323: PetscFunctionBeginUser;
324: for (ii = 0; ii < ctx->num_species; ii++) qv0[ii] = ctx->charges[ii] * ctx->v_0;
325: PetscCall(VecGetDM(X, &dm));
326: PetscCall(DMGetDS(dm, &prob));
327: PetscCall(DMConvert(dm, DMPLEX, &plex));
328: /* get d current / dt */
329: PetscCall(PetscDSSetConstants(prob, ctx->num_species, qv0));
330: PetscCall(PetscDSSetObjective(prob, 0, &f0_jz_sum));
331: PetscCheck(X_t, PETSC_COMM_SELF, PETSC_ERR_PLIB, "X_t");
332: PetscCall(DMPlexComputeIntegralFEM(plex, X_t, tt, NULL));
333: dJ_dt = -ctx->n_0 * PetscRealPart(tt[0]) / ctx->t_0;
334: /* E induction */
335: *a_E = -rectx->L * dJ_dt + rectx->Ez_initial;
336: PetscCall(DMDestroy(&plex));
337: PetscFunctionReturn(PETSC_SUCCESS);
338: }
340: static PetscErrorCode EConstant(Vec X, Vec X_t, PetscInt step, PetscReal time, LandauCtx *ctx, PetscReal *a_E)
341: {
342: PetscFunctionBeginUser;
343: *a_E = ctx->Ez;
344: PetscFunctionReturn(PETSC_SUCCESS);
345: }
347: static PetscErrorCode ENone(Vec X, Vec X_t, PetscInt step, PetscReal time, LandauCtx *ctx, PetscReal *a_E)
348: {
349: PetscFunctionBeginUser;
350: *a_E = 0;
351: PetscFunctionReturn(PETSC_SUCCESS);
352: }
354: /* ------------------------------------------------------------------- */
355: /*
356: FormSource - Evaluates source terms F(t).
358: Input Parameters:
359: . ts - the TS context
360: . time -
361: . X_dummmy - input vector
362: . dummy - optional user-defined context, as set by SNESSetFunction()
364: Output Parameter:
365: . F - function vector
366: */
367: static PetscErrorCode FormSource(TS ts, PetscReal ftime, Vec X_dummmy, Vec F, void *dummy)
368: {
369: PetscReal new_imp_rate;
370: LandauCtx *ctx;
371: DM pack;
372: REctx *rectx;
374: PetscFunctionBeginUser;
375: PetscCall(TSGetDM(ts, &pack));
376: PetscCall(DMGetApplicationContext(pack, &ctx));
377: rectx = (REctx *)ctx->data;
378: /* check for impurities */
379: PetscCall(rectx->impuritySrcRate(ftime, &new_imp_rate, ctx));
380: if (new_imp_rate != 0) {
381: if (new_imp_rate != rectx->current_rate) {
382: PetscInt ii;
383: PetscReal dne_dt, dni_dt, tilda_ns[LANDAU_MAX_SPECIES], temps[LANDAU_MAX_SPECIES];
384: Vec globFarray[LANDAU_MAX_GRIDS * LANDAU_MAX_BATCH_SZ];
385: rectx->current_rate = new_imp_rate;
386: for (ii = 1; ii < LANDAU_MAX_SPECIES; ii++) tilda_ns[ii] = 0;
387: for (ii = 1; ii < LANDAU_MAX_SPECIES; ii++) temps[ii] = 1;
388: dni_dt = new_imp_rate /* *ctx->t_0 */; /* fully ionized immediately, no normalize, stay in non-dim */
389: dne_dt = new_imp_rate * rectx->Ne_ion /* *ctx->t_0 */;
390: tilda_ns[0] = dne_dt;
391: tilda_ns[rectx->imp_idx] = dni_dt;
392: temps[0] = rectx->T_cold;
393: temps[rectx->imp_idx] = rectx->T_cold;
394: PetscCall(PetscInfo(ctx->plex[0], "\tHave new_imp_rate= %10.3e time= %10.3e de/dt= %10.3e di/dt= %10.3e ***\n", (double)new_imp_rate, (double)ftime, (double)dne_dt, (double)dni_dt));
395: PetscCall(DMCompositeGetAccessArray(pack, F, ctx->num_grids * ctx->batch_sz, NULL, globFarray));
396: for (PetscInt grid = 0; grid < ctx->num_grids; grid++) {
397: /* add it */
398: PetscCall(DMPlexLandauAddMaxwellians(ctx->plex[grid], globFarray[LAND_PACK_IDX(0, grid)], ftime, temps, tilda_ns, grid, 0, 1, ctx));
399: }
400: // Does DMCompositeRestoreAccessArray copy the data back? (no)
401: PetscCall(DMCompositeRestoreAccessArray(pack, F, ctx->num_grids * ctx->batch_sz, NULL, globFarray));
402: }
403: } else {
404: PetscCall(VecZeroEntries(F));
405: rectx->current_rate = 0;
406: }
407: PetscFunctionReturn(PETSC_SUCCESS);
408: }
410: static PetscErrorCode Monitor(TS ts, PetscInt stepi, PetscReal time, Vec X, void *actx)
411: {
412: LandauCtx *ctx = (LandauCtx *)actx; /* user-defined application context */
413: REctx *rectx = (REctx *)ctx->data;
414: DM pack = NULL;
415: Vec globXArray[LANDAU_MAX_GRIDS * LANDAU_MAX_BATCH_SZ];
416: TSConvergedReason reason;
418: PetscFunctionBeginUser;
419: PetscCall(TSGetConvergedReason(ts, &reason));
420: if (rectx->grid_view_idx != -1 || (reason && ctx->verbose > 3)) {
421: PetscCall(VecGetDM(X, &pack));
422: PetscCall(DMCompositeGetAccessArray(pack, X, ctx->num_grids * ctx->batch_sz, NULL, globXArray));
423: }
424: if (stepi > rectx->plotStep && rectx->plotting) {
425: rectx->plotting = PETSC_FALSE; /* was doing diagnostics, now done */
426: rectx->plotIdx++;
427: }
428: /* view */
429: if (time / rectx->plotDt >= (PetscReal)rectx->plotIdx || reason) {
430: if ((reason || stepi == 0 || rectx->plotIdx % rectx->print_period == 0) && ctx->verbose > 1) {
431: /* print norms */
432: PetscCall(DMPlexLandauPrintNorms(X, stepi));
433: }
434: if (!rectx->plotting) { /* first step of possible backtracks */
435: rectx->plotting = PETSC_TRUE;
436: /* diagnostics + change E field with Sptizer (not just a monitor) */
437: PetscCall(rectx->test(ts, X, stepi, time, reason ? PETSC_TRUE : PETSC_FALSE, ctx, rectx));
438: } else {
439: PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\t\t ERROR SKIP test spit ------\n"));
440: rectx->plotting = PETSC_TRUE;
441: }
442: if (rectx->grid_view_idx != -1) {
443: PetscCall(PetscObjectSetName((PetscObject)globXArray[LAND_PACK_IDX(ctx->batch_view_idx, rectx->grid_view_idx)], rectx->grid_view_idx == 0 ? "ue" : "ui"));
444: /* view, overwrite step when back tracked */
445: PetscCall(DMSetOutputSequenceNumber(ctx->plex[rectx->grid_view_idx], rectx->plotIdx, time * ctx->t_0));
446: PetscCall(VecViewFromOptions(globXArray[LAND_PACK_IDX(ctx->batch_view_idx, rectx->grid_view_idx)], NULL, "-ex2_vec_view"));
447: }
448: rectx->plotStep = stepi;
449: } else {
450: if (rectx->plotting) PetscCall(PetscPrintf(PETSC_COMM_WORLD, " ERROR rectx->plotting=%s step %" PetscInt_FMT "\n", PetscBools[rectx->plotting], stepi));
451: /* diagnostics + change E field with Sptizer (not just a monitor) - can we lag this? */
452: PetscCall(rectx->test(ts, X, stepi, time, reason ? PETSC_TRUE : PETSC_FALSE, ctx, rectx));
453: }
454: /* parallel check that only works of all batches are identical */
455: if (reason && ctx->verbose > 3 && ctx->batch_sz > 1) {
456: PetscReal val, rval;
457: PetscMPIInt rank;
458: PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank));
459: for (PetscInt grid = 0; grid < ctx->num_grids; grid++) {
460: PetscInt nerrors = 0;
461: for (PetscInt i = 0; i < ctx->batch_sz; i++) {
462: PetscCall(VecNorm(globXArray[LAND_PACK_IDX(i, grid)], NORM_2, &val));
463: if (i == 0) rval = val;
464: else if ((val = PetscAbs(val - rval) / rval) > 1000 * PETSC_MACHINE_EPSILON) {
465: PetscCall(PetscPrintf(PETSC_COMM_SELF, " [%d] Warning %" PetscInt_FMT ".%" PetscInt_FMT ") diff = %2.15e\n", rank, grid, i, (double)val));
466: nerrors++;
467: }
468: }
469: if (nerrors) {
470: PetscCall(PetscPrintf(PETSC_COMM_SELF, " ***** [%d] ERROR max %" PetscInt_FMT " errors\n", rank, nerrors));
471: } else {
472: PetscCall(PetscPrintf(PETSC_COMM_WORLD, "[%d] %" PetscInt_FMT ") batch consistency check OK\n", rank, grid));
473: }
474: }
475: }
476: rectx->idx = 0;
477: if (rectx->grid_view_idx != -1 || (reason && ctx->verbose > 3)) PetscCall(DMCompositeRestoreAccessArray(pack, X, ctx->num_grids * ctx->batch_sz, NULL, globXArray));
478: PetscFunctionReturn(PETSC_SUCCESS);
479: }
481: static PetscErrorCode PreStep(TS ts)
482: {
483: LandauCtx *ctx;
484: REctx *rectx;
485: DM dm;
486: PetscInt stepi;
487: PetscReal time;
488: Vec X;
490: PetscFunctionBeginUser;
491: /* not used */
492: PetscCall(TSGetDM(ts, &dm));
493: PetscCall(TSGetTime(ts, &time));
494: PetscCall(TSGetSolution(ts, &X));
495: PetscCall(DMGetApplicationContext(dm, &ctx));
496: rectx = (REctx *)ctx->data;
497: PetscCall(TSGetStepNumber(ts, &stepi));
498: /* update E */
499: PetscCall(rectx->E(X, NULL, stepi, time, ctx, &ctx->Ez));
500: PetscFunctionReturn(PETSC_SUCCESS);
501: }
503: /* model for source of non-ionized impurities, profile provided by model, in du/dt form in normalized units (tricky because n_0 is normalized with electrons) */
504: static PetscErrorCode stepSrc(PetscReal time, PetscReal *rho, LandauCtx *ctx)
505: {
506: REctx *rectx = (REctx *)ctx->data;
508: PetscFunctionBeginUser;
509: if (time >= rectx->pulse_start) *rho = rectx->pulse_rate;
510: else *rho = 0.;
511: PetscFunctionReturn(PETSC_SUCCESS);
512: }
513: static PetscErrorCode zeroSrc(PetscReal time, PetscReal *rho, LandauCtx *ctx)
514: {
515: PetscFunctionBeginUser;
516: *rho = 0.;
517: PetscFunctionReturn(PETSC_SUCCESS);
518: }
520: static PetscErrorCode pulseSrc(PetscReal time, PetscReal *rho, LandauCtx *ctx)
521: {
522: REctx *rectx = (REctx *)ctx->data;
524: PetscFunctionBeginUser;
525: PetscCheck(rectx->pulse_start != PETSC_MAX_REAL, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "'-ex2_pulse_start_time X' must be used with '-ex2_impurity_source_type pulse'");
526: if (time < rectx->pulse_start || time > rectx->pulse_start + 3 * rectx->pulse_width) *rho = 0;
527: else {
528: double x = PetscSinReal((time - rectx->pulse_start) / (3 * rectx->pulse_width) * 2 * PETSC_PI - PETSC_PI / 2) + 1; /* 0:2, integrates to 1.0 */
529: *rho = rectx->pulse_rate * x / (3 * rectx->pulse_width);
530: if (!rectx->use_spitzer_eta) rectx->use_spitzer_eta = PETSC_TRUE; /* use it next time */
531: }
532: PetscFunctionReturn(PETSC_SUCCESS);
533: }
535: static PetscErrorCode ProcessREOptions(REctx *rectx, const LandauCtx *ctx, DM dm, const char prefix[])
536: {
537: PetscFunctionList plist = NULL, testlist = NULL, elist = NULL;
538: char pname[256], testname[256], ename[256];
539: DM dm_dummy;
540: PetscBool Connor_E = PETSC_FALSE;
542: PetscFunctionBeginUser;
543: PetscCall(DMCreate(PETSC_COMM_WORLD, &dm_dummy));
544: rectx->Ne_ion = 1; /* number of electrons given up by impurity ion */
545: rectx->T_cold = .005; /* kev */
546: rectx->ion_potential = 15; /* ev */
547: rectx->L = 2;
548: rectx->X_0 = NULL;
549: rectx->imp_idx = ctx->num_species - 1; /* default ionized impurity as last one */
550: rectx->pulse_start = PETSC_MAX_REAL;
551: rectx->pulse_width = 1;
552: rectx->plotStep = PETSC_INT_MAX;
553: rectx->pulse_rate = 1.e-1;
554: rectx->current_rate = 0;
555: rectx->plotIdx = 0;
556: rectx->j = 0;
557: rectx->plotDt = 1.0;
558: rectx->plotting = PETSC_FALSE;
559: rectx->use_spitzer_eta = PETSC_FALSE;
560: rectx->idx = 0;
561: rectx->print_period = 10;
562: rectx->grid_view_idx = -1; // do not get if not needed
563: /* Register the available impurity sources */
564: PetscCall(PetscFunctionListAdd(&plist, "step", &stepSrc));
565: PetscCall(PetscFunctionListAdd(&plist, "none", &zeroSrc));
566: PetscCall(PetscFunctionListAdd(&plist, "pulse", &pulseSrc));
567: PetscCall(PetscStrncpy(pname, "none", sizeof(pname)));
568: PetscCall(PetscFunctionListAdd(&testlist, "none", &testNone));
569: PetscCall(PetscFunctionListAdd(&testlist, "spitzer", &testSpitzer));
570: PetscCall(PetscFunctionListAdd(&testlist, "stable", &testStable));
571: PetscCall(PetscStrncpy(testname, "none", sizeof(testname)));
572: PetscCall(PetscFunctionListAdd(&elist, "none", &ENone));
573: PetscCall(PetscFunctionListAdd(&elist, "induction", &EInduction));
574: PetscCall(PetscFunctionListAdd(&elist, "constant", &EConstant));
575: PetscCall(PetscStrncpy(ename, "constant", sizeof(ename)));
577: PetscOptionsBegin(PETSC_COMM_SELF, prefix, "Options for Runaway/seed electron model", "none");
578: PetscCall(PetscOptionsReal("-ex2_plot_dt", "Plotting interval", "ex2.c", rectx->plotDt, &rectx->plotDt, NULL));
579: if (rectx->plotDt < 0) rectx->plotDt = 1e30;
580: if (rectx->plotDt == 0) rectx->plotDt = 1e-30;
581: PetscCall(PetscOptionsInt("-ex2_print_period", "Plotting interval", "ex2.c", rectx->print_period, &rectx->print_period, NULL));
582: PetscCall(PetscOptionsInt("-ex2_grid_view_idx", "grid_view_idx", "ex2.c", rectx->grid_view_idx, &rectx->grid_view_idx, NULL));
583: PetscCheck(rectx->grid_view_idx < ctx->num_grids || rectx->grid_view_idx == -1, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "rectx->grid_view_idx (%" PetscInt_FMT ") >= ctx->num_grids (%" PetscInt_FMT ")", rectx->imp_idx, ctx->num_grids);
584: PetscCall(PetscOptionsFList("-ex2_impurity_source_type", "Name of impurity source to run", "", plist, pname, pname, sizeof(pname), NULL));
585: PetscCall(PetscOptionsFList("-ex2_test_type", "Name of test to run", "", testlist, testname, testname, sizeof(testname), NULL));
586: PetscCall(PetscOptionsInt("-ex2_impurity_index", "index of sink for impurities", "none", rectx->imp_idx, &rectx->imp_idx, NULL));
587: PetscCheck((rectx->imp_idx < ctx->num_species && rectx->imp_idx >= 1) || ctx->num_species <= 1, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "index of sink for impurities ions is out of range (%" PetscInt_FMT "), must be > 0 && < NS", rectx->imp_idx);
588: PetscCall(PetscOptionsFList("-ex2_e_field_type", "Electric field type", "", elist, ename, ename, sizeof(ename), NULL));
589: rectx->Ne_ion = -ctx->charges[rectx->imp_idx] / ctx->charges[0];
590: PetscCall(PetscOptionsReal("-ex2_t_cold", "Temperature of cold electron and ions after ionization in keV", "none", rectx->T_cold, &rectx->T_cold, NULL));
591: PetscCall(PetscOptionsReal("-ex2_pulse_start_time", "Time at which pulse happens for 'pulse' source", "none", rectx->pulse_start, &rectx->pulse_start, NULL));
592: PetscCall(PetscOptionsReal("-ex2_pulse_width_time", "Width of pulse 'pulse' source", "none", rectx->pulse_width, &rectx->pulse_width, NULL));
593: PetscCall(PetscOptionsReal("-ex2_pulse_rate", "Number density of pulse for 'pulse' source", "none", rectx->pulse_rate, &rectx->pulse_rate, NULL));
594: rectx->T_cold *= 1.16e7; /* convert to Kelvin */
595: PetscCall(PetscOptionsReal("-ex2_ion_potential", "Potential to ionize impurity (should be array) in ev", "none", rectx->ion_potential, &rectx->ion_potential, NULL));
596: PetscCall(PetscOptionsReal("-ex2_inductance", "Inductance E field", "none", rectx->L, &rectx->L, NULL));
597: PetscCall(PetscOptionsBool("-ex2_connor_e_field_units", "Scale Ex but Connor-Hastie E_c", "none", Connor_E, &Connor_E, NULL));
598: PetscCall(PetscInfo(dm_dummy, "Num electrons from ions=%g, T_cold=%10.3e, ion potential=%10.3e, E_z=%10.3e v_0=%10.3e\n", (double)rectx->Ne_ion, (double)rectx->T_cold, (double)rectx->ion_potential, (double)ctx->Ez, (double)ctx->v_0));
599: PetscOptionsEnd();
600: /* get impurity source rate function */
601: PetscCall(PetscFunctionListFind(plist, pname, &rectx->impuritySrcRate));
602: PetscCheck(rectx->impuritySrcRate, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "No impurity source function found '%s'", pname);
603: PetscCall(PetscFunctionListFind(testlist, testname, &rectx->test));
604: PetscCheck(rectx->test, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "No test found '%s'", testname);
605: PetscCall(PetscFunctionListFind(elist, ename, &rectx->E));
606: PetscCheck(rectx->E, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "No E field function found '%s'", ename);
607: PetscCall(PetscFunctionListDestroy(&plist));
608: PetscCall(PetscFunctionListDestroy(&testlist));
609: PetscCall(PetscFunctionListDestroy(&elist));
611: /* convert E from Connor-Hastie E_c units to real if doing Spitzer E */
612: if (Connor_E) {
613: PetscReal E = ctx->Ez, Tev = ctx->thermal_temps[0] * 8.621738e-5, n = ctx->n_0 * ctx->n[0];
614: CalculateE(Tev, n, ctx->lambdas[0][1], ctx->epsilon0, &E);
615: ((LandauCtx *)ctx)->Ez *= E;
616: }
617: PetscCall(DMDestroy(&dm_dummy));
618: PetscFunctionReturn(PETSC_SUCCESS);
619: }
621: int main(int argc, char **argv)
622: {
623: DM pack;
624: Vec X;
625: PetscInt dim = 2, nDMs;
626: TS ts;
627: Mat J;
628: PetscDS prob;
629: LandauCtx *ctx;
630: REctx *rectx;
631: PetscMPIInt rank;
632: PetscLogStage stage;
634: PetscFunctionBeginUser;
635: PetscCall(PetscInitialize(&argc, &argv, NULL, help));
636: PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank));
637: if (rank) { /* turn off output stuff for duplicate runs */
638: PetscCall(PetscOptionsClearValue(NULL, "-ex2_dm_view"));
639: PetscCall(PetscOptionsClearValue(NULL, "-ex2_vec_view"));
640: PetscCall(PetscOptionsClearValue(NULL, "-ex2_vec_view_init"));
641: PetscCall(PetscOptionsClearValue(NULL, "-ex2_dm_view_init"));
642: PetscCall(PetscOptionsClearValue(NULL, "-info")); /* this does not work */
643: }
644: PetscCall(PetscOptionsGetInt(NULL, NULL, "-dim", &dim, NULL));
645: /* Create a mesh */
646: PetscCall(DMPlexLandauCreateVelocitySpace(PETSC_COMM_WORLD, dim, "", &X, &J, &pack));
647: PetscCall(DMCompositeGetNumberDM(pack, &nDMs));
648: PetscCall(PetscObjectSetName((PetscObject)J, "Jacobian"));
649: PetscCall(PetscObjectSetName((PetscObject)X, "f"));
650: PetscCall(DMGetApplicationContext(pack, &ctx));
651: PetscCall(DMSetUp(pack));
652: /* context */
653: PetscCall(PetscNew(&rectx));
654: ctx->data = rectx;
655: PetscCall(ProcessREOptions(rectx, ctx, pack, ""));
656: PetscCall(DMGetDS(pack, &prob));
657: if (rectx->grid_view_idx != -1) {
658: Vec *XsubArray = NULL;
659: PetscCall(PetscMalloc(sizeof(*XsubArray) * nDMs, &XsubArray));
660: PetscCall(DMCompositeGetAccessArray(pack, X, nDMs, NULL, XsubArray)); // read only
661: PetscCall(PetscObjectSetName((PetscObject)XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, rectx->grid_view_idx)], rectx->grid_view_idx == 0 ? "ue" : "ui"));
662: PetscCall(DMSetOutputSequenceNumber(ctx->plex[rectx->grid_view_idx], 0, 0.0));
663: PetscCall(DMViewFromOptions(ctx->plex[rectx->grid_view_idx], NULL, "-ex2_dm_view"));
664: PetscCall(DMViewFromOptions(ctx->plex[rectx->grid_view_idx], NULL, "-ex2_dm_view_init"));
665: PetscCall(VecViewFromOptions(XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, rectx->grid_view_idx)], NULL, "-ex2_vec_view")); // initial condition (monitor plots after step)
666: PetscCall(VecViewFromOptions(XsubArray[LAND_PACK_IDX(ctx->batch_view_idx, rectx->grid_view_idx)], NULL, "-ex2_vec_view_init")); // initial condition (monitor plots after step)
667: PetscCall(DMCompositeRestoreAccessArray(pack, X, nDMs, NULL, XsubArray)); // read only
668: PetscCall(PetscFree(XsubArray));
669: }
670: /* Create timestepping solver context */
671: PetscCall(TSCreate(PETSC_COMM_SELF, &ts));
672: PetscCall(TSSetDM(ts, pack));
673: PetscCall(TSSetIFunction(ts, NULL, DMPlexLandauIFunction, NULL));
674: PetscCall(TSSetIJacobian(ts, J, J, DMPlexLandauIJacobian, NULL));
675: PetscCall(TSSetRHSFunction(ts, NULL, FormSource, NULL));
676: PetscCall(TSSetFromOptions(ts));
677: PetscCall(TSSetSolution(ts, X));
678: PetscCall(TSSetApplicationContext(ts, ctx));
679: PetscCall(TSMonitorSet(ts, Monitor, ctx, NULL));
680: PetscCall(TSSetPreStep(ts, PreStep));
681: rectx->Ez_initial = ctx->Ez; /* cache for induction calculation - applied E field */
682: if (1) { /* warm up an test just DMPlexLandauIJacobian */
683: Vec vec;
684: PetscInt nsteps;
685: PetscReal dt;
686: PetscCall(PetscLogStageRegister("Warmup", &stage));
687: PetscCall(PetscLogStagePush(stage));
688: PetscCall(VecDuplicate(X, &vec));
689: PetscCall(VecCopy(X, vec));
690: PetscCall(TSGetMaxSteps(ts, &nsteps));
691: PetscCall(TSGetTimeStep(ts, &dt));
692: PetscCall(TSSetMaxSteps(ts, 1));
693: PetscCall(TSSolve(ts, X));
694: PetscCall(TSSetMaxSteps(ts, nsteps));
695: PetscCall(TSSetStepNumber(ts, 0));
696: PetscCall(TSSetTime(ts, 0));
697: PetscCall(TSSetTimeStep(ts, dt));
698: rectx->plotIdx = 0;
699: rectx->plotting = PETSC_FALSE;
700: PetscCall(PetscLogStagePop());
701: PetscCall(VecCopy(vec, X));
702: PetscCall(VecDestroy(&vec));
703: PetscCall(PetscObjectStateIncrease((PetscObject)ctx->J));
704: }
705: /* go */
706: PetscCall(PetscLogStageRegister("Solve", &stage));
707: ctx->stage = 0; // lets not use this stage
708: PetscCall(PetscLogStagePush(stage));
709: #if defined(PETSC_HAVE_CUDA_NVTX)
710: nvtxRangePushA("ex2-TSSolve-warm");
711: #endif
712: PetscCall(TSSolve(ts, X));
713: #if defined(PETSC_HAVE_CUDA_NVTX)
714: nvtxRangePop();
715: #endif
716: PetscCall(PetscLogStagePop());
717: /* clean up */
718: PetscCall(DMPlexLandauDestroyVelocitySpace(&pack));
719: PetscCall(TSDestroy(&ts));
720: PetscCall(VecDestroy(&X));
721: PetscCall(PetscFree(rectx));
722: PetscCall(PetscFinalize());
723: return 0;
724: }
726: /*TEST
728: testset:
729: requires: p4est !complex double defined(PETSC_USE_DMLANDAU_2D)
730: output_file: output/ex2_0.out
731: args: -dm_landau_num_species_grid 1,1 -dm_landau_Ez 0 -petscspace_degree 3 -petscspace_poly_tensor 1 -dm_landau_type p4est -dm_landau_ion_masses 2 \
732: -dm_landau_ion_charges 1 -dm_landau_thermal_temps 5,5 -dm_landau_n 2,2 -dm_landau_n_0 5e19 -ts_monitor -snes_rtol 1.e-9 -snes_stol 1.e-14 -snes_monitor \
733: -snes_converged_reason -snes_max_it 10 -ts_type arkimex -ts_arkimex_type 1bee -ts_max_snes_failures unlimited -ts_rtol 1e-3 -ts_time_step 1.e-2 -ts_max_time 1 -ts_adapt_clip .5,1.25 -ts_max_steps 2 -ts_adapt_scale_solve_failed 0.75 -ts_adapt_time_step_increase_delay 5 -dm_landau_amr_levels_max 2,2 -dm_landau_amr_re_levels 2 -dm_landau_re_radius 0 -ex2_impurity_source_type pulse -ex2_pulse_start_time 1e-1 -ex2_pulse_width_time 10 -ex2_pulse_rate 1e-2 -ex2_t_cold .05 -ex2_plot_dt 1e-1 -dm_refine 0 -dm_landau_gpu_assembly true -dm_landau_batch_size 2 -dm_landau_verbose 2 -dm_landau_domain_radius 5.,5.
734: test:
735: suffix: cpu
736: args: -dm_landau_device_type cpu -ksp_type bicg -pc_type jacobi
737: test:
738: suffix: kokkos
739: requires: kokkos_kernels !defined(PETSC_HAVE_CUDA_CLANG)
740: args: -dm_landau_device_type kokkos -dm_mat_type aijkokkos -dm_vec_type kokkos -ksp_type bicg -pc_type jacobi
741: test:
742: suffix: kokkos_batch
743: requires: kokkos_kernels
744: args: -dm_landau_device_type kokkos -dm_mat_type aijkokkos -dm_vec_type kokkos -ksp_type preonly -pc_type bjkokkos -pc_bjkokkos_ksp_type bicg -pc_bjkokkos_pc_type jacobi
745: test:
746: suffix: kokkos_batch_tfqmr
747: requires: kokkos_kernels !defined(PETSC_HAVE_CUDA_CLANG)
748: args: -dm_landau_device_type kokkos -dm_mat_type aijkokkos -dm_vec_type kokkos -ksp_type preonly -pc_type bjkokkos -pc_bjkokkos_ksp_type tfqmr -pc_bjkokkos_pc_type jacobi
750: test:
751: requires: !complex double defined(PETSC_USE_DMLANDAU_2D) !cuda
752: suffix: single
753: nsize: 1
754: args: -dm_refine 2 -dm_landau_num_species_grid 1 -dm_landau_thermal_temps 1 -dm_landau_electron_shift 1.25 -petscspace_degree 3 -snes_converged_reason -ts_type beuler -ts_time_step .1\
755: -ex2_plot_dt .1 -ts_max_steps 1 -ex2_grid_view_idx 0 -ex2_dm_view -snes_rtol 1.e-13 -snes_stol 1.e-13 -dm_landau_verbose 2 -ex2_print_period 1 -ksp_type preonly -pc_type lu -dm_landau_device_type cpu -dm_landau_use_relativistic_corrections
757: testset:
758: requires: !complex double defined(PETSC_USE_DMLANDAU_2D)
759: nsize: 1
760: output_file: output/ex2_simplex.out
761: args: -dim 2 -dm_landau_num_species_grid 1,1 -petscspace_degree 2 -dm_landau_simplex -dm_landau_ion_masses 2 -dm_landau_ion_charges 1 -dm_landau_thermal_temps 2,1 -dm_landau_n 1,1 -snes_rtol 1e-15\
762: -snes_stol 1e-15 -snes_monitor -ts_type beuler -snes_converged_reason -ts_exact_final_time stepover -ts_time_step .1 -ts_max_steps 1 -ts_max_snes_failures unlimited -ksp_type preonly\
763: -pc_type lu -dm_landau_verbose 2 -ex2_grid_view_idx 0 -ex2_dm_view -dm_refine 1 -ksp_type bicg -pc_type jacobi
764: test:
765: suffix: simplex
766: args: -dm_landau_device_type cpu
767: test:
768: suffix: simplexkokkos
769: requires: kokkos_kernels !defined(PETSC_HAVE_CUDA_CLANG) !sycl
770: args: -dm_landau_device_type kokkos -dm_mat_type aijkokkos -dm_vec_type kokkos
772: test:
773: requires: double !defined(PETSC_USE_DMLANDAU_2D)
774: suffix: sphere_3d
775: nsize: 1
776: args: -dim 3 -dm_landau_thermal_temps 2 -ts_type beuler -ts_time_step .1 -ts_max_steps 1 -dm_landau_verbose 2 -ksp_type preonly -pc_type lu -dm_landau_device_type cpu -snes_rtol 1.e-14 -snes_stol 1.e-14 -snes_converged_reason \
777: -dm_landau_sphere -ex2_grid_view_idx 0 -ex2_dm_view -dm_landau_domain_radius 6 -dm_landau_sphere_inner_radius_90degree_scale .35 -petscspace_degree 3 -dm_refine 0 # -ex2_dm_view hdf5:my.hdf5:hdf5_viz -ex2_vec_view hdf5:my.hdf5:hdf5_viz:append
779: TEST*/