Actual source code: section.c
1: /*
2: This file contains routines for basic section object implementation.
3: */
5: #include <petsc/private/sectionimpl.h>
6: #include <petscsf.h>
8: PetscClassId PETSC_SECTION_CLASSID;
10: /*@
11: PetscSectionCreate - Allocates a `PetscSection` and sets the map contents to the default.
13: Collective
15: Input Parameters:
16: + comm - the MPI communicator
17: - s - pointer to the section
19: Level: beginner
21: Notes:
22: Typical calling sequence
23: .vb
24: PetscSectionCreate(MPI_Comm,PetscSection *);!
25: PetscSectionSetNumFields(PetscSection, numFields);
26: PetscSectionSetChart(PetscSection,low,high);
27: PetscSectionSetDof(PetscSection,point,numdof);
28: PetscSectionSetUp(PetscSection);
29: PetscSectionGetOffset(PetscSection,point,PetscInt *);
30: PetscSectionDestroy(PetscSection);
31: .ve
33: The `PetscSection` object and methods are intended to be used in the PETSc `Vec` and `Mat` implementations. The indices returned by the `PetscSection` are appropriate for the kind of `Vec` it is associated with. For example, if the vector being indexed is a local vector, we call the section a local section. If the section indexes a global vector, we call it a global section. For parallel vectors, like global vectors, we use negative indices to indicate dofs owned by other processes.
35: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetChart()`, `PetscSectionDestroy()`, `PetscSectionCreateGlobalSection()`
36: @*/
37: PetscErrorCode PetscSectionCreate(MPI_Comm comm, PetscSection *s)
38: {
39: PetscFunctionBegin;
40: PetscAssertPointer(s, 2);
41: PetscCall(ISInitializePackage());
43: PetscCall(PetscHeaderCreate(*s, PETSC_SECTION_CLASSID, "PetscSection", "Section", "IS", comm, PetscSectionDestroy, PetscSectionView));
44: (*s)->pStart = -1;
45: (*s)->pEnd = -1;
46: (*s)->perm = NULL;
47: (*s)->pointMajor = PETSC_TRUE;
48: (*s)->includesConstraints = PETSC_TRUE;
49: (*s)->atlasDof = NULL;
50: (*s)->atlasOff = NULL;
51: (*s)->bc = NULL;
52: (*s)->bcIndices = NULL;
53: (*s)->setup = PETSC_FALSE;
54: (*s)->numFields = 0;
55: (*s)->fieldNames = NULL;
56: (*s)->field = NULL;
57: (*s)->useFieldOff = PETSC_FALSE;
58: (*s)->compNames = NULL;
59: (*s)->clObj = NULL;
60: (*s)->clHash = NULL;
61: (*s)->clSection = NULL;
62: (*s)->clPoints = NULL;
63: PetscCall(PetscSectionInvalidateMaxDof_Internal(*s));
64: PetscFunctionReturn(PETSC_SUCCESS);
65: }
67: /*@
68: PetscSectionCopy - Creates a shallow (if possible) copy of the `PetscSection`
70: Collective
72: Input Parameter:
73: . section - the `PetscSection`
75: Output Parameter:
76: . newSection - the copy
78: Level: intermediate
80: Developer Notes:
81: What exactly does shallow mean in this context?
83: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`
84: @*/
85: PetscErrorCode PetscSectionCopy(PetscSection section, PetscSection newSection)
86: {
87: PetscFunctionBegin;
90: PetscCall(PetscSectionCopy_Internal(section, newSection, NULL));
91: PetscFunctionReturn(PETSC_SUCCESS);
92: }
94: PetscErrorCode PetscSectionCopy_Internal(PetscSection section, PetscSection newSection, PetscBT constrained_dofs)
95: {
96: PetscSectionSym sym;
97: IS perm;
98: PetscInt numFields, f, c, pStart, pEnd, p;
100: PetscFunctionBegin;
103: PetscCall(PetscSectionReset(newSection));
104: PetscCall(PetscSectionGetNumFields(section, &numFields));
105: if (numFields) PetscCall(PetscSectionSetNumFields(newSection, numFields));
106: for (f = 0; f < numFields; ++f) {
107: const char *fieldName = NULL, *compName = NULL;
108: PetscInt numComp = 0;
110: PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
111: PetscCall(PetscSectionSetFieldName(newSection, f, fieldName));
112: PetscCall(PetscSectionGetFieldComponents(section, f, &numComp));
113: PetscCall(PetscSectionSetFieldComponents(newSection, f, numComp));
114: for (c = 0; c < numComp; ++c) {
115: PetscCall(PetscSectionGetComponentName(section, f, c, &compName));
116: PetscCall(PetscSectionSetComponentName(newSection, f, c, compName));
117: }
118: PetscCall(PetscSectionGetFieldSym(section, f, &sym));
119: PetscCall(PetscSectionSetFieldSym(newSection, f, sym));
120: }
121: PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
122: PetscCall(PetscSectionSetChart(newSection, pStart, pEnd));
123: PetscCall(PetscSectionGetPermutation(section, &perm));
124: PetscCall(PetscSectionSetPermutation(newSection, perm));
125: PetscCall(PetscSectionGetSym(section, &sym));
126: PetscCall(PetscSectionSetSym(newSection, sym));
127: for (p = pStart; p < pEnd; ++p) {
128: PetscInt dof, cdof, fcdof = 0;
129: PetscBool force_constrained = (PetscBool)(constrained_dofs && PetscBTLookup(constrained_dofs, p - pStart));
131: PetscCall(PetscSectionGetDof(section, p, &dof));
132: PetscCall(PetscSectionSetDof(newSection, p, dof));
133: if (force_constrained) cdof = dof;
134: else PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
135: if (cdof) PetscCall(PetscSectionSetConstraintDof(newSection, p, cdof));
136: for (f = 0; f < numFields; ++f) {
137: PetscCall(PetscSectionGetFieldDof(section, p, f, &dof));
138: PetscCall(PetscSectionSetFieldDof(newSection, p, f, dof));
139: if (cdof) {
140: if (force_constrained) fcdof = dof;
141: else PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
142: if (fcdof) PetscCall(PetscSectionSetFieldConstraintDof(newSection, p, f, fcdof));
143: }
144: }
145: }
146: PetscCall(PetscSectionSetUp(newSection));
147: for (p = pStart; p < pEnd; ++p) {
148: PetscInt off, cdof, fcdof = 0;
149: const PetscInt *cInd;
150: PetscBool force_constrained = (PetscBool)(constrained_dofs && PetscBTLookup(constrained_dofs, p - pStart));
152: /* Must set offsets in case they do not agree with the prefix sums */
153: PetscCall(PetscSectionGetOffset(section, p, &off));
154: PetscCall(PetscSectionSetOffset(newSection, p, off));
155: PetscCall(PetscSectionGetConstraintDof(newSection, p, &cdof));
156: if (cdof) {
157: if (force_constrained) cInd = NULL;
158: else PetscCall(PetscSectionGetConstraintIndices(section, p, &cInd));
159: PetscCall(PetscSectionSetConstraintIndices(newSection, p, cInd));
160: for (f = 0; f < numFields; ++f) {
161: PetscCall(PetscSectionGetFieldOffset(section, p, f, &off));
162: PetscCall(PetscSectionSetFieldOffset(newSection, p, f, off));
163: PetscCall(PetscSectionGetFieldConstraintDof(newSection, p, f, &fcdof));
164: if (fcdof) {
165: if (force_constrained) cInd = NULL;
166: else PetscCall(PetscSectionGetFieldConstraintIndices(section, p, f, &cInd));
167: PetscCall(PetscSectionSetFieldConstraintIndices(newSection, p, f, cInd));
168: }
169: }
170: }
171: }
172: PetscFunctionReturn(PETSC_SUCCESS);
173: }
175: /*@
176: PetscSectionClone - Creates a shallow (if possible) copy of the `PetscSection`
178: Collective
180: Input Parameter:
181: . section - the `PetscSection`
183: Output Parameter:
184: . newSection - the copy
186: Level: beginner
188: Developer Notes:
189: With standard PETSc terminology this should be called `PetscSectionDuplicate()`
191: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionCopy()`
192: @*/
193: PetscErrorCode PetscSectionClone(PetscSection section, PetscSection *newSection)
194: {
195: PetscFunctionBegin;
197: PetscAssertPointer(newSection, 2);
198: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)section), newSection));
199: PetscCall(PetscSectionCopy(section, *newSection));
200: PetscFunctionReturn(PETSC_SUCCESS);
201: }
203: /*@
204: PetscSectionSetFromOptions - sets parameters in a `PetscSection` from the options database
206: Collective
208: Input Parameter:
209: . s - the `PetscSection`
211: Options Database Key:
212: . -petscsection_point_major - `PETSC_TRUE` for point-major order
214: Level: intermediate
216: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`
217: @*/
218: PetscErrorCode PetscSectionSetFromOptions(PetscSection s)
219: {
220: PetscFunctionBegin;
222: PetscObjectOptionsBegin((PetscObject)s);
223: PetscCall(PetscOptionsBool("-petscsection_point_major", "The for ordering, either point major or field major", "PetscSectionSetPointMajor", s->pointMajor, &s->pointMajor, NULL));
224: /* process any options handlers added with PetscObjectAddOptionsHandler() */
225: PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)s, PetscOptionsObject));
226: PetscOptionsEnd();
227: PetscCall(PetscObjectViewFromOptions((PetscObject)s, NULL, "-petscsection_view"));
228: PetscFunctionReturn(PETSC_SUCCESS);
229: }
231: /*@
232: PetscSectionCompare - Compares two sections
234: Collective
236: Input Parameters:
237: + s1 - the first `PetscSection`
238: - s2 - the second `PetscSection`
240: Output Parameter:
241: . congruent - `PETSC_TRUE` if the two sections are congruent, `PETSC_FALSE` otherwise
243: Level: intermediate
245: Note:
246: Field names are disregarded.
248: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionCopy()`, `PetscSectionClone()`
249: @*/
250: PetscErrorCode PetscSectionCompare(PetscSection s1, PetscSection s2, PetscBool *congruent)
251: {
252: PetscInt pStart, pEnd, nfields, ncdof, nfcdof, p, f, n1, n2;
253: const PetscInt *idx1, *idx2;
254: IS perm1, perm2;
255: PetscBool flg;
256: PetscMPIInt mflg;
258: PetscFunctionBegin;
261: PetscAssertPointer(congruent, 3);
262: flg = PETSC_FALSE;
264: PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)s1), PetscObjectComm((PetscObject)s2), &mflg));
265: if (mflg != MPI_CONGRUENT && mflg != MPI_IDENT) {
266: *congruent = PETSC_FALSE;
267: PetscFunctionReturn(PETSC_SUCCESS);
268: }
270: PetscCall(PetscSectionGetChart(s1, &pStart, &pEnd));
271: PetscCall(PetscSectionGetChart(s2, &n1, &n2));
272: if (pStart != n1 || pEnd != n2) goto not_congruent;
274: PetscCall(PetscSectionGetPermutation(s1, &perm1));
275: PetscCall(PetscSectionGetPermutation(s2, &perm2));
276: if (perm1 && perm2) {
277: PetscCall(ISEqual(perm1, perm2, congruent));
278: if (!*congruent) goto not_congruent;
279: } else if (perm1 != perm2) goto not_congruent;
281: for (p = pStart; p < pEnd; ++p) {
282: PetscCall(PetscSectionGetOffset(s1, p, &n1));
283: PetscCall(PetscSectionGetOffset(s2, p, &n2));
284: if (n1 != n2) goto not_congruent;
286: PetscCall(PetscSectionGetDof(s1, p, &n1));
287: PetscCall(PetscSectionGetDof(s2, p, &n2));
288: if (n1 != n2) goto not_congruent;
290: PetscCall(PetscSectionGetConstraintDof(s1, p, &ncdof));
291: PetscCall(PetscSectionGetConstraintDof(s2, p, &n2));
292: if (ncdof != n2) goto not_congruent;
294: PetscCall(PetscSectionGetConstraintIndices(s1, p, &idx1));
295: PetscCall(PetscSectionGetConstraintIndices(s2, p, &idx2));
296: PetscCall(PetscArraycmp(idx1, idx2, ncdof, congruent));
297: if (!*congruent) goto not_congruent;
298: }
300: PetscCall(PetscSectionGetNumFields(s1, &nfields));
301: PetscCall(PetscSectionGetNumFields(s2, &n2));
302: if (nfields != n2) goto not_congruent;
304: for (f = 0; f < nfields; ++f) {
305: PetscCall(PetscSectionGetFieldComponents(s1, f, &n1));
306: PetscCall(PetscSectionGetFieldComponents(s2, f, &n2));
307: if (n1 != n2) goto not_congruent;
309: for (p = pStart; p < pEnd; ++p) {
310: PetscCall(PetscSectionGetFieldOffset(s1, p, f, &n1));
311: PetscCall(PetscSectionGetFieldOffset(s2, p, f, &n2));
312: if (n1 != n2) goto not_congruent;
314: PetscCall(PetscSectionGetFieldDof(s1, p, f, &n1));
315: PetscCall(PetscSectionGetFieldDof(s2, p, f, &n2));
316: if (n1 != n2) goto not_congruent;
318: PetscCall(PetscSectionGetFieldConstraintDof(s1, p, f, &nfcdof));
319: PetscCall(PetscSectionGetFieldConstraintDof(s2, p, f, &n2));
320: if (nfcdof != n2) goto not_congruent;
322: PetscCall(PetscSectionGetFieldConstraintIndices(s1, p, f, &idx1));
323: PetscCall(PetscSectionGetFieldConstraintIndices(s2, p, f, &idx2));
324: PetscCall(PetscArraycmp(idx1, idx2, nfcdof, congruent));
325: if (!*congruent) goto not_congruent;
326: }
327: }
329: flg = PETSC_TRUE;
330: not_congruent:
331: PetscCallMPI(MPIU_Allreduce(&flg, congruent, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)s1)));
332: PetscFunctionReturn(PETSC_SUCCESS);
333: }
335: /*@
336: PetscSectionGetNumFields - Returns the number of fields in a `PetscSection`, or 0 if no fields were defined.
338: Not Collective
340: Input Parameter:
341: . s - the `PetscSection`
343: Output Parameter:
344: . numFields - the number of fields defined, or 0 if none were defined
346: Level: intermediate
348: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetNumFields()`
349: @*/
350: PetscErrorCode PetscSectionGetNumFields(PetscSection s, PetscInt *numFields)
351: {
352: PetscFunctionBegin;
354: PetscAssertPointer(numFields, 2);
355: *numFields = s->numFields;
356: PetscFunctionReturn(PETSC_SUCCESS);
357: }
359: /*@
360: PetscSectionSetNumFields - Sets the number of fields in a `PetscSection`
362: Not Collective
364: Input Parameters:
365: + s - the `PetscSection`
366: - numFields - the number of fields
368: Level: intermediate
370: Notes:
371: Calling this destroys all the information in the `PetscSection` including the chart.
373: You must call `PetscSectionSetChart()` after calling this.
375: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetNumFields()`, `PetscSectionSetChart()`, `PetscSectionReset()`
376: @*/
377: PetscErrorCode PetscSectionSetNumFields(PetscSection s, PetscInt numFields)
378: {
379: PetscInt f;
381: PetscFunctionBegin;
383: PetscCheck(numFields > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "The number of fields %" PetscInt_FMT " must be positive", numFields);
384: PetscCall(PetscSectionReset(s));
386: s->numFields = numFields;
387: PetscCall(PetscMalloc1(s->numFields, &s->numFieldComponents));
388: PetscCall(PetscMalloc1(s->numFields, &s->fieldNames));
389: PetscCall(PetscMalloc1(s->numFields, &s->compNames));
390: PetscCall(PetscMalloc1(s->numFields, &s->field));
391: for (f = 0; f < s->numFields; ++f) {
392: char name[64];
394: s->numFieldComponents[f] = 1;
396: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &s->field[f]));
397: PetscCall(PetscSNPrintf(name, 64, "Field_%" PetscInt_FMT, f));
398: PetscCall(PetscStrallocpy(name, &s->fieldNames[f]));
399: PetscCall(PetscSNPrintf(name, 64, "Component_0"));
400: PetscCall(PetscMalloc1(s->numFieldComponents[f], &s->compNames[f]));
401: PetscCall(PetscStrallocpy(name, &s->compNames[f][0]));
402: }
403: PetscFunctionReturn(PETSC_SUCCESS);
404: }
406: /*@
407: PetscSectionGetFieldName - Returns the name of a field in the `PetscSection`
409: Not Collective
411: Input Parameters:
412: + s - the `PetscSection`
413: - field - the field number
415: Output Parameter:
416: . fieldName - the field name
418: Level: intermediate
420: Note:
421: Will error if the field number is out of range
423: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`
424: @*/
425: PetscErrorCode PetscSectionGetFieldName(PetscSection s, PetscInt field, const char *fieldName[])
426: {
427: PetscFunctionBegin;
429: PetscAssertPointer(fieldName, 3);
430: PetscSectionCheckValidField(field, s->numFields);
431: *fieldName = s->fieldNames[field];
432: PetscFunctionReturn(PETSC_SUCCESS);
433: }
435: /*@
436: PetscSectionSetFieldName - Sets the name of a field in the `PetscSection`
438: Not Collective
440: Input Parameters:
441: + s - the `PetscSection`
442: . field - the field number
443: - fieldName - the field name
445: Level: intermediate
447: Note:
448: Will error if the field number is out of range
450: .seealso: [PetscSection](sec_petscsection), `PetscSectionGetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`
451: @*/
452: PetscErrorCode PetscSectionSetFieldName(PetscSection s, PetscInt field, const char fieldName[])
453: {
454: PetscFunctionBegin;
456: if (fieldName) PetscAssertPointer(fieldName, 3);
457: PetscSectionCheckValidField(field, s->numFields);
458: PetscCall(PetscFree(s->fieldNames[field]));
459: PetscCall(PetscStrallocpy(fieldName, &s->fieldNames[field]));
460: PetscFunctionReturn(PETSC_SUCCESS);
461: }
463: /*@
464: PetscSectionGetComponentName - Gets the name of a field component in the `PetscSection`
466: Not Collective
468: Input Parameters:
469: + s - the `PetscSection`
470: . field - the field number
471: - comp - the component number
473: Output Parameter:
474: . compName - the component name
476: Level: intermediate
478: Note:
479: Will error if the field or component number do not exist
481: Developer Notes:
482: The function name should have Field in it since they are field components.
484: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`,
485: `PetscSectionSetComponentName()`, `PetscSectionSetFieldName()`, `PetscSectionGetFieldComponents()`, `PetscSectionSetFieldComponents()`
486: @*/
487: PetscErrorCode PetscSectionGetComponentName(PetscSection s, PetscInt field, PetscInt comp, const char *compName[])
488: {
489: PetscFunctionBegin;
491: PetscAssertPointer(compName, 4);
492: PetscSectionCheckValidField(field, s->numFields);
493: PetscSectionCheckValidFieldComponent(comp, s->numFieldComponents[field]);
494: *compName = s->compNames[field][comp];
495: PetscFunctionReturn(PETSC_SUCCESS);
496: }
498: /*@
499: PetscSectionSetComponentName - Sets the name of a field component in the `PetscSection`
501: Not Collective
503: Input Parameters:
504: + s - the `PetscSection`
505: . field - the field number
506: . comp - the component number
507: - compName - the component name
509: Level: advanced
511: Note:
512: Will error if the field or component number do not exist
514: Developer Notes:
515: The function name should have Field in it since they are field components.
517: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetComponentName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`,
518: `PetscSectionSetFieldName()`, `PetscSectionGetFieldComponents()`, `PetscSectionSetFieldComponents()`
519: @*/
520: PetscErrorCode PetscSectionSetComponentName(PetscSection s, PetscInt field, PetscInt comp, const char compName[])
521: {
522: PetscFunctionBegin;
524: if (compName) PetscAssertPointer(compName, 4);
525: PetscSectionCheckValidField(field, s->numFields);
526: PetscSectionCheckValidFieldComponent(comp, s->numFieldComponents[field]);
527: PetscCall(PetscFree(s->compNames[field][comp]));
528: PetscCall(PetscStrallocpy(compName, &s->compNames[field][comp]));
529: PetscFunctionReturn(PETSC_SUCCESS);
530: }
532: /*@
533: PetscSectionGetFieldComponents - Returns the number of field components for the given field.
535: Not Collective
537: Input Parameters:
538: + s - the `PetscSection`
539: - field - the field number
541: Output Parameter:
542: . numComp - the number of field components
544: Level: advanced
546: Developer Notes:
547: This function is misnamed. There is a Num in `PetscSectionGetNumFields()` but not in this name
549: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldComponents()`, `PetscSectionGetNumFields()`,
550: `PetscSectionSetComponentName()`, `PetscSectionGetComponentName()`
551: @*/
552: PetscErrorCode PetscSectionGetFieldComponents(PetscSection s, PetscInt field, PetscInt *numComp)
553: {
554: PetscFunctionBegin;
556: PetscAssertPointer(numComp, 3);
557: PetscSectionCheckValidField(field, s->numFields);
558: *numComp = s->numFieldComponents[field];
559: PetscFunctionReturn(PETSC_SUCCESS);
560: }
562: /*@
563: PetscSectionSetFieldComponents - Sets the number of field components for the given field.
565: Not Collective
567: Input Parameters:
568: + s - the `PetscSection`
569: . field - the field number
570: - numComp - the number of field components
572: Level: advanced
574: Note:
575: This number can be different than the values set with `PetscSectionSetFieldDof()`. It can be used to indicate the number of
576: components in the field of the underlying physical model which may be different than the number of degrees of freedom needed
577: at a point in a discretization. For example, if in three dimensions the field is velocity, it will have 3 components, u, v, and w but
578: an face based model for velocity (where the velocity normal to the face is stored) there is only 1 dof for each face point.
580: The value set with this function are not needed or used in `PetscSectionSetUp()`.
582: Developer Notes:
583: This function is misnamed. There is a Num in `PetscSectionSetNumFields()` but not in this name
585: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldComponents()`, `PetscSectionSetComponentName()`,
586: `PetscSectionGetComponentName()`, `PetscSectionGetNumFields()`
587: @*/
588: PetscErrorCode PetscSectionSetFieldComponents(PetscSection s, PetscInt field, PetscInt numComp)
589: {
590: PetscInt c;
592: PetscFunctionBegin;
594: PetscSectionCheckValidField(field, s->numFields);
595: if (s->compNames) {
596: for (c = 0; c < s->numFieldComponents[field]; ++c) PetscCall(PetscFree(s->compNames[field][c]));
597: PetscCall(PetscFree(s->compNames[field]));
598: }
600: s->numFieldComponents[field] = numComp;
601: if (numComp) {
602: PetscCall(PetscMalloc1(numComp, &s->compNames[field]));
603: for (c = 0; c < numComp; ++c) {
604: char name[64];
606: PetscCall(PetscSNPrintf(name, 64, "%" PetscInt_FMT, c));
607: PetscCall(PetscStrallocpy(name, &s->compNames[field][c]));
608: }
609: }
610: PetscFunctionReturn(PETSC_SUCCESS);
611: }
613: /*@
614: PetscSectionGetChart - Returns the range [`pStart`, `pEnd`) in which points (indices) lie for this `PetscSection` on this MPI process
616: Not Collective
618: Input Parameter:
619: . s - the `PetscSection`
621: Output Parameters:
622: + pStart - the first point
623: - pEnd - one past the last point
625: Level: intermediate
627: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetChart()`, `PetscSectionCreate()`
628: @*/
629: PetscErrorCode PetscSectionGetChart(PetscSection s, PetscInt *pStart, PetscInt *pEnd)
630: {
631: PetscFunctionBegin;
633: if (pStart) *pStart = s->pStart;
634: if (pEnd) *pEnd = s->pEnd;
635: PetscFunctionReturn(PETSC_SUCCESS);
636: }
638: /*@
639: PetscSectionSetChart - Sets the range [`pStart`, `pEnd`) in which points (indices) lie for this `PetscSection` on this MPI process
641: Not Collective
643: Input Parameters:
644: + s - the `PetscSection`
645: . pStart - the first point
646: - pEnd - one past the last point, `pStart` $ \le $ `pEnd`
648: Level: intermediate
650: Notes:
651: The charts on different MPI processes may (and often do) overlap
653: If you intend to use `PetscSectionSetNumFields()` it must be called before this call.
655: The chart for all fields created with `PetscSectionSetNumFields()` is the same as this chart.
657: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetChart()`, `PetscSectionCreate()`, `PetscSectionSetNumFields()`
658: @*/
659: PetscErrorCode PetscSectionSetChart(PetscSection s, PetscInt pStart, PetscInt pEnd)
660: {
661: PetscInt f;
663: PetscFunctionBegin;
665: PetscCheck(pEnd >= pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Chart pEnd %" PetscInt_FMT " cannot be smaller than chart pStart %" PetscInt_FMT, pEnd, pStart);
666: if (pStart == s->pStart && pEnd == s->pEnd) PetscFunctionReturn(PETSC_SUCCESS);
667: /* Cannot Reset() because it destroys field information */
668: s->setup = PETSC_FALSE;
669: PetscCall(PetscSectionDestroy(&s->bc));
670: PetscCall(PetscFree(s->bcIndices));
671: PetscCall(PetscFree2(s->atlasDof, s->atlasOff));
673: s->pStart = pStart;
674: s->pEnd = pEnd;
675: PetscCall(PetscMalloc2(pEnd - pStart, &s->atlasDof, pEnd - pStart, &s->atlasOff));
676: PetscCall(PetscArrayzero(s->atlasDof, pEnd - pStart));
677: for (f = 0; f < s->numFields; ++f) PetscCall(PetscSectionSetChart(s->field[f], pStart, pEnd));
678: PetscFunctionReturn(PETSC_SUCCESS);
679: }
681: /*@
682: PetscSectionGetPermutation - Returns the permutation of [0, `pEnd` - `pStart`) or `NULL` that was set with `PetscSectionSetPermutation()`
684: Not Collective
686: Input Parameter:
687: . s - the `PetscSection`
689: Output Parameter:
690: . perm - The permutation as an `IS`
692: Level: intermediate
694: .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionSetPermutation()`, `PetscSectionCreate()`
695: @*/
696: PetscErrorCode PetscSectionGetPermutation(PetscSection s, IS *perm)
697: {
698: PetscFunctionBegin;
700: if (perm) {
701: PetscAssertPointer(perm, 2);
702: *perm = s->perm;
703: }
704: PetscFunctionReturn(PETSC_SUCCESS);
705: }
707: /*@
708: PetscSectionSetPermutation - Sets a permutation of the chart for this section, [0, `pEnd` - `pStart`), which determines the order to store the `PetscSection` information
710: Not Collective
712: Input Parameters:
713: + s - the `PetscSection`
714: - perm - the permutation of points
716: Level: intermediate
718: Notes:
719: The permutation must be provided before `PetscSectionSetUp()`.
721: The data in the `PetscSection` are permuted but the access via `PetscSectionGetFieldOffset()` and `PetscSectionGetOffset()` is not changed
723: Compare to `PetscSectionPermute()`
725: .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionSetUp()`, `PetscSectionGetPermutation()`, `PetscSectionPermute()`, `PetscSectionCreate()`
726: @*/
727: PetscErrorCode PetscSectionSetPermutation(PetscSection s, IS perm)
728: {
729: PetscFunctionBegin;
732: PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set a permutation after the section is setup");
733: if (s->perm != perm) {
734: PetscCall(ISDestroy(&s->perm));
735: if (perm) {
736: s->perm = perm;
737: PetscCall(PetscObjectReference((PetscObject)s->perm));
738: }
739: }
740: PetscFunctionReturn(PETSC_SUCCESS);
741: }
743: /*@C
744: PetscSectionGetBlockStarts - Returns a table indicating which points start new blocks
746: Not Collective, No Fortran Support
748: Input Parameter:
749: . s - the `PetscSection`
751: Output Parameter:
752: . blockStarts - The `PetscBT` with a 1 for each point that begins a block
754: Notes:
755: The table is on [0, `pEnd` - `pStart`).
757: This information is used by `DMCreateMatrix()` to create a variable block size description which is set using `MatSetVariableBlockSizes()`.
759: Level: intermediate
761: .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionSetBlockStarts()`, `PetscSectionCreate()`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
762: @*/
763: PetscErrorCode PetscSectionGetBlockStarts(PetscSection s, PetscBT *blockStarts)
764: {
765: PetscFunctionBegin;
767: if (blockStarts) {
768: PetscAssertPointer(blockStarts, 2);
769: *blockStarts = s->blockStarts;
770: }
771: PetscFunctionReturn(PETSC_SUCCESS);
772: }
774: /*@C
775: PetscSectionSetBlockStarts - Sets a table indicating which points start new blocks
777: Not Collective, No Fortran Support
779: Input Parameters:
780: + s - the `PetscSection`
781: - blockStarts - The `PetscBT` with a 1 for each point that begins a block
783: Level: intermediate
785: Notes:
786: The table is on [0, `pEnd` - `pStart`). PETSc takes ownership of the `PetscBT` when it is passed in and will destroy it. The user should not destroy it.
788: This information is used by `DMCreateMatrix()` to create a variable block size description which is set using `MatSetVariableBlockSizes()`.
790: .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionGetBlockStarts()`, `PetscSectionCreate()`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
791: @*/
792: PetscErrorCode PetscSectionSetBlockStarts(PetscSection s, PetscBT blockStarts)
793: {
794: PetscFunctionBegin;
796: if (s->blockStarts != blockStarts) {
797: PetscCall(PetscBTDestroy(&s->blockStarts));
798: s->blockStarts = blockStarts;
799: }
800: PetscFunctionReturn(PETSC_SUCCESS);
801: }
803: /*@
804: PetscSectionGetPointMajor - Returns the flag for dof ordering, `PETSC_TRUE` if it is point major, `PETSC_FALSE` if it is field major
806: Not Collective
808: Input Parameter:
809: . s - the `PetscSection`
811: Output Parameter:
812: . pm - the flag for point major ordering
814: Level: intermediate
816: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetPointMajor()`
817: @*/
818: PetscErrorCode PetscSectionGetPointMajor(PetscSection s, PetscBool *pm)
819: {
820: PetscFunctionBegin;
822: PetscAssertPointer(pm, 2);
823: *pm = s->pointMajor;
824: PetscFunctionReturn(PETSC_SUCCESS);
825: }
827: /*@
828: PetscSectionSetPointMajor - Sets the flag for dof ordering, `PETSC_TRUE` for point major, otherwise it will be field major
830: Not Collective
832: Input Parameters:
833: + s - the `PetscSection`
834: - pm - the flag for point major ordering
836: Level: intermediate
838: Note:
839: Field-major order is not recommended unless you are managing the entire problem yourself, since many higher-level functions in PETSc depend on point-major order.
841: Point major order means the degrees of freedom are stored as follows
842: .vb
843: all the degrees of freedom for each point are stored contiguously, one point after another (respecting a permutation set with `PetscSectionSetPermutation()`)
844: for each point
845: the degrees of freedom for each field (starting with the unnamed default field) are listed in order by field
846: .ve
848: Field major order means the degrees of freedom are stored as follows
849: .vb
850: all degrees of freedom for each field (including the unnamed default field) are stored contiguously, one field after another
851: for each field (started with unnamed default field)
852: the degrees of freedom for each point are listed in order by point (respecting a permutation set with `PetscSectionSetPermutation()`)
853: .ve
855: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetPointMajor()`, `PetscSectionSetPermutation()`
856: @*/
857: PetscErrorCode PetscSectionSetPointMajor(PetscSection s, PetscBool pm)
858: {
859: PetscFunctionBegin;
861: PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set the dof ordering after the section is setup");
862: s->pointMajor = pm;
863: PetscFunctionReturn(PETSC_SUCCESS);
864: }
866: /*@
867: PetscSectionGetIncludesConstraints - Returns the flag indicating if constrained dofs were included when computing offsets in the `PetscSection`.
868: The value is set with `PetscSectionSetIncludesConstraints()`
870: Not Collective
872: Input Parameter:
873: . s - the `PetscSection`
875: Output Parameter:
876: . includesConstraints - the flag indicating if constrained dofs were included when computing offsets
878: Level: intermediate
880: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetIncludesConstraints()`
881: @*/
882: PetscErrorCode PetscSectionGetIncludesConstraints(PetscSection s, PetscBool *includesConstraints)
883: {
884: PetscFunctionBegin;
886: PetscAssertPointer(includesConstraints, 2);
887: *includesConstraints = s->includesConstraints;
888: PetscFunctionReturn(PETSC_SUCCESS);
889: }
891: /*@
892: PetscSectionSetIncludesConstraints - Sets the flag indicating if constrained dofs are to be included when computing offsets
894: Not Collective
896: Input Parameters:
897: + s - the `PetscSection`
898: - includesConstraints - the flag indicating if constrained dofs are to be included when computing offsets
900: Level: intermediate
902: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetIncludesConstraints()`
903: @*/
904: PetscErrorCode PetscSectionSetIncludesConstraints(PetscSection s, PetscBool includesConstraints)
905: {
906: PetscFunctionBegin;
908: PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set includesConstraints after the section is set up");
909: s->includesConstraints = includesConstraints;
910: PetscFunctionReturn(PETSC_SUCCESS);
911: }
913: /*@
914: PetscSectionGetDof - Return the total number of degrees of freedom associated with a given point.
916: Not Collective
918: Input Parameters:
919: + s - the `PetscSection`
920: - point - the point
922: Output Parameter:
923: . numDof - the number of dof
925: Level: intermediate
927: Notes:
928: In a global section, this size will be negative for points not owned by this process.
930: This number is for the unnamed default field at the given point plus all degrees of freedom associated with all fields at that point
932: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionCreate()`
933: @*/
934: PetscErrorCode PetscSectionGetDof(PetscSection s, PetscInt point, PetscInt *numDof)
935: {
936: PetscFunctionBeginHot;
938: PetscAssertPointer(numDof, 3);
939: PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd);
940: *numDof = s->atlasDof[point - s->pStart];
941: PetscFunctionReturn(PETSC_SUCCESS);
942: }
944: /*@
945: PetscSectionSetDof - Sets the total number of degrees of freedom associated with a given point.
947: Not Collective
949: Input Parameters:
950: + s - the `PetscSection`
951: . point - the point
952: - numDof - the number of dof, these values may be negative -(dof+1) to indicate they are off process
954: Level: intermediate
956: Note:
957: This number is for the unnamed default field at the given point plus all degrees of freedom associated with all fields at that point
959: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionAddDof()`, `PetscSectionCreate()`
960: @*/
961: PetscErrorCode PetscSectionSetDof(PetscSection s, PetscInt point, PetscInt numDof)
962: {
963: PetscFunctionBegin;
965: PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd);
966: s->atlasDof[point - s->pStart] = numDof;
967: PetscCall(PetscSectionInvalidateMaxDof_Internal(s));
968: PetscFunctionReturn(PETSC_SUCCESS);
969: }
971: /*@
972: PetscSectionAddDof - Adds to the total number of degrees of freedom associated with a given point.
974: Not Collective
976: Input Parameters:
977: + s - the `PetscSection`
978: . point - the point
979: - numDof - the number of additional dof
981: Level: intermediate
983: Note:
984: This number is for the unnamed default field at the given point plus all degrees of freedom associated with all fields at that point
986: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetDof()`, `PetscSectionCreate()`
987: @*/
988: PetscErrorCode PetscSectionAddDof(PetscSection s, PetscInt point, PetscInt numDof)
989: {
990: PetscFunctionBeginHot;
992: PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd);
993: PetscCheck(numDof >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "numDof %" PetscInt_FMT " should not be negative", numDof);
994: s->atlasDof[point - s->pStart] += numDof;
995: PetscCall(PetscSectionInvalidateMaxDof_Internal(s));
996: PetscFunctionReturn(PETSC_SUCCESS);
997: }
999: /*@
1000: PetscSectionGetFieldDof - Return the number of degrees of freedom associated with a field on a given point.
1002: Not Collective
1004: Input Parameters:
1005: + s - the `PetscSection`
1006: . point - the point
1007: - field - the field
1009: Output Parameter:
1010: . numDof - the number of dof
1012: Level: intermediate
1014: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldDof()`, `PetscSectionCreate()`
1015: @*/
1016: PetscErrorCode PetscSectionGetFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt *numDof)
1017: {
1018: PetscFunctionBegin;
1020: PetscAssertPointer(numDof, 4);
1021: PetscSectionCheckValidField(field, s->numFields);
1022: PetscCall(PetscSectionGetDof(s->field[field], point, numDof));
1023: PetscFunctionReturn(PETSC_SUCCESS);
1024: }
1026: /*@
1027: PetscSectionSetFieldDof - Sets the number of degrees of freedom associated with a field on a given point.
1029: Not Collective
1031: Input Parameters:
1032: + s - the `PetscSection`
1033: . point - the point
1034: . field - the field
1035: - numDof - the number of dof, these values may be negative -(dof+1) to indicate they are off process
1037: Level: intermediate
1039: Note:
1040: When setting the number of dof for a field at a point one must also ensure the count of the total number of dof at the point (summed over
1041: the fields and the unnamed default field) is correct by also calling `PetscSectionAddDof()` or `PetscSectionSetDof()`
1043: This is equivalent to
1044: .vb
1045: PetscSection fs;
1046: PetscSectionGetField(s,field,&fs)
1047: PetscSectionSetDof(fs,numDof)
1048: .ve
1050: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldDof()`, `PetscSectionCreate()`, `PetscSectionAddDof()`, `PetscSectionSetDof()`
1051: @*/
1052: PetscErrorCode PetscSectionSetFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof)
1053: {
1054: PetscFunctionBegin;
1056: PetscSectionCheckValidField(field, s->numFields);
1057: PetscCall(PetscSectionSetDof(s->field[field], point, numDof));
1058: PetscFunctionReturn(PETSC_SUCCESS);
1059: }
1061: /*@
1062: PetscSectionAddFieldDof - Adds a number of degrees of freedom associated with a field on a given point.
1064: Not Collective
1066: Input Parameters:
1067: + s - the `PetscSection`
1068: . point - the point
1069: . field - the field
1070: - numDof - the number of dof
1072: Level: intermediate
1074: Notes:
1075: When adding to the number of dof for a field at a point one must also ensure the count of the total number of dof at the point (summed over
1076: the fields and the unnamed default field) is correct by also calling `PetscSectionAddDof()` or `PetscSectionSetDof()`
1078: This is equivalent to
1079: .vb
1080: PetscSection fs;
1081: PetscSectionGetField(s,field,&fs)
1082: PetscSectionAddDof(fs,numDof)
1083: .ve
1085: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldDof()`, `PetscSectionGetFieldDof()`, `PetscSectionCreate()`
1086: @*/
1087: PetscErrorCode PetscSectionAddFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof)
1088: {
1089: PetscFunctionBegin;
1091: PetscSectionCheckValidField(field, s->numFields);
1092: PetscCall(PetscSectionAddDof(s->field[field], point, numDof));
1093: PetscFunctionReturn(PETSC_SUCCESS);
1094: }
1096: /*@
1097: PetscSectionGetConstraintDof - Return the number of constrained degrees of freedom associated with a given point.
1099: Not Collective
1101: Input Parameters:
1102: + s - the `PetscSection`
1103: - point - the point
1105: Output Parameter:
1106: . numDof - the number of dof which are fixed by constraints
1108: Level: intermediate
1110: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetConstraintDof()`, `PetscSectionCreate()`
1111: @*/
1112: PetscErrorCode PetscSectionGetConstraintDof(PetscSection s, PetscInt point, PetscInt *numDof)
1113: {
1114: PetscFunctionBegin;
1116: PetscAssertPointer(numDof, 3);
1117: if (s->bc) {
1118: PetscCall(PetscSectionGetDof(s->bc, point, numDof));
1119: } else *numDof = 0;
1120: PetscFunctionReturn(PETSC_SUCCESS);
1121: }
1123: /*@
1124: PetscSectionSetConstraintDof - Set the number of constrained degrees of freedom associated with a given point.
1126: Not Collective
1128: Input Parameters:
1129: + s - the `PetscSection`
1130: . point - the point
1131: - numDof - the number of dof which are fixed by constraints
1133: Level: intermediate
1135: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionGetConstraintDof()`, `PetscSectionCreate()`
1136: @*/
1137: PetscErrorCode PetscSectionSetConstraintDof(PetscSection s, PetscInt point, PetscInt numDof)
1138: {
1139: PetscFunctionBegin;
1141: if (numDof) {
1142: PetscCall(PetscSectionCheckConstraints_Private(s));
1143: PetscCall(PetscSectionSetDof(s->bc, point, numDof));
1144: }
1145: PetscFunctionReturn(PETSC_SUCCESS);
1146: }
1148: /*@
1149: PetscSectionAddConstraintDof - Increment the number of constrained degrees of freedom associated with a given point.
1151: Not Collective
1153: Input Parameters:
1154: + s - the `PetscSection`
1155: . point - the point
1156: - numDof - the number of additional dof which are fixed by constraints
1158: Level: intermediate
1160: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionAddDof()`, `PetscSectionGetConstraintDof()`, `PetscSectionCreate()`
1161: @*/
1162: PetscErrorCode PetscSectionAddConstraintDof(PetscSection s, PetscInt point, PetscInt numDof)
1163: {
1164: PetscFunctionBegin;
1166: if (numDof) {
1167: PetscCall(PetscSectionCheckConstraints_Private(s));
1168: PetscCall(PetscSectionAddDof(s->bc, point, numDof));
1169: }
1170: PetscFunctionReturn(PETSC_SUCCESS);
1171: }
1173: /*@
1174: PetscSectionGetFieldConstraintDof - Return the number of constrained degrees of freedom associated with a given field on a point.
1176: Not Collective
1178: Input Parameters:
1179: + s - the `PetscSection`
1180: . point - the point
1181: - field - the field
1183: Output Parameter:
1184: . numDof - the number of dof which are fixed by constraints
1186: Level: intermediate
1188: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetFieldConstraintDof()`, `PetscSectionCreate()`
1189: @*/
1190: PetscErrorCode PetscSectionGetFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt *numDof)
1191: {
1192: PetscFunctionBegin;
1194: PetscAssertPointer(numDof, 4);
1195: PetscSectionCheckValidField(field, s->numFields);
1196: PetscCall(PetscSectionGetConstraintDof(s->field[field], point, numDof));
1197: PetscFunctionReturn(PETSC_SUCCESS);
1198: }
1200: /*@
1201: PetscSectionSetFieldConstraintDof - Set the number of constrained degrees of freedom associated with a given field on a point.
1203: Not Collective
1205: Input Parameters:
1206: + s - the `PetscSection`
1207: . point - the point
1208: . field - the field
1209: - numDof - the number of dof which are fixed by constraints
1211: Level: intermediate
1213: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionGetFieldConstraintDof()`, `PetscSectionCreate()`
1214: @*/
1215: PetscErrorCode PetscSectionSetFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof)
1216: {
1217: PetscFunctionBegin;
1219: PetscSectionCheckValidField(field, s->numFields);
1220: PetscCall(PetscSectionSetConstraintDof(s->field[field], point, numDof));
1221: PetscFunctionReturn(PETSC_SUCCESS);
1222: }
1224: /*@
1225: PetscSectionAddFieldConstraintDof - Increment the number of constrained degrees of freedom associated with a given field on a point.
1227: Not Collective
1229: Input Parameters:
1230: + s - the `PetscSection`
1231: . point - the point
1232: . field - the field
1233: - numDof - the number of additional dof which are fixed by constraints
1235: Level: intermediate
1237: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionAddDof()`, `PetscSectionGetFieldConstraintDof()`, `PetscSectionCreate()`
1238: @*/
1239: PetscErrorCode PetscSectionAddFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof)
1240: {
1241: PetscFunctionBegin;
1243: PetscSectionCheckValidField(field, s->numFields);
1244: PetscCall(PetscSectionAddConstraintDof(s->field[field], point, numDof));
1245: PetscFunctionReturn(PETSC_SUCCESS);
1246: }
1248: /*@
1249: PetscSectionSetUpBC - Setup the subsections describing boundary conditions.
1251: Not Collective
1253: Input Parameter:
1254: . s - the `PetscSection`
1256: Level: advanced
1258: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetUp()`, `PetscSectionCreate()`
1259: @*/
1260: PetscErrorCode PetscSectionSetUpBC(PetscSection s)
1261: {
1262: PetscFunctionBegin;
1264: if (s->bc) {
1265: const PetscInt last = (s->bc->pEnd - s->bc->pStart) - 1;
1267: PetscCall(PetscSectionSetUp(s->bc));
1268: if (last >= 0) PetscCall(PetscMalloc1(s->bc->atlasOff[last] + s->bc->atlasDof[last], &s->bcIndices));
1269: else s->bcIndices = NULL;
1270: }
1271: PetscFunctionReturn(PETSC_SUCCESS);
1272: }
1274: /*@
1275: PetscSectionSetUp - Calculate offsets based upon the number of degrees of freedom for each point in preparation for use of the `PetscSection`
1277: Not Collective
1279: Input Parameter:
1280: . s - the `PetscSection`
1282: Level: intermediate
1284: Notes:
1285: If used, `PetscSectionSetPermutation()` must be called before this routine.
1287: `PetscSectionSetPointMajor()`, cannot be called after this routine.
1289: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionSetPermutation()`
1290: @*/
1291: PetscErrorCode PetscSectionSetUp(PetscSection s)
1292: {
1293: PetscInt f;
1294: const PetscInt *pind = NULL;
1295: PetscCount offset = 0;
1297: PetscFunctionBegin;
1299: if (s->setup) PetscFunctionReturn(PETSC_SUCCESS);
1300: s->setup = PETSC_TRUE;
1301: /* Set offsets and field offsets for all points */
1302: /* Assume that all fields have the same chart */
1303: PetscCheck(s->includesConstraints, PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSectionSetUp is currently unsupported for includesConstraints = PETSC_TRUE");
1304: if (s->perm) PetscCall(ISGetIndices(s->perm, &pind));
1305: if (s->pointMajor) {
1306: PetscCount foff;
1307: for (PetscInt p = 0; p < s->pEnd - s->pStart; ++p) {
1308: const PetscInt q = pind ? pind[p] : p;
1310: /* Set point offset */
1311: PetscCall(PetscIntCast(offset, &s->atlasOff[q]));
1312: offset += s->atlasDof[q];
1313: /* Set field offset */
1314: for (f = 0, foff = s->atlasOff[q]; f < s->numFields; ++f) {
1315: PetscSection sf = s->field[f];
1317: PetscCall(PetscIntCast(foff, &sf->atlasOff[q]));
1318: foff += sf->atlasDof[q];
1319: }
1320: }
1321: } else {
1322: /* Set field offsets for all points */
1323: for (f = 0; f < s->numFields; ++f) {
1324: PetscSection sf = s->field[f];
1326: for (PetscInt p = 0; p < s->pEnd - s->pStart; ++p) {
1327: const PetscInt q = pind ? pind[p] : p;
1329: PetscCall(PetscIntCast(offset, &sf->atlasOff[q]));
1330: offset += sf->atlasDof[q];
1331: }
1332: }
1333: /* Disable point offsets since these are unused */
1334: for (PetscInt p = 0; p < s->pEnd - s->pStart; ++p) s->atlasOff[p] = -1;
1335: }
1336: if (s->perm) PetscCall(ISRestoreIndices(s->perm, &pind));
1337: /* Setup BC sections */
1338: PetscCall(PetscSectionSetUpBC(s));
1339: for (f = 0; f < s->numFields; ++f) PetscCall(PetscSectionSetUpBC(s->field[f]));
1340: PetscFunctionReturn(PETSC_SUCCESS);
1341: }
1343: /*@
1344: PetscSectionGetMaxDof - Return the maximum number of degrees of freedom on any point in the `PetscSection`
1346: Not Collective
1348: Input Parameter:
1349: . s - the `PetscSection`
1351: Output Parameter:
1352: . maxDof - the maximum dof
1354: Level: intermediate
1356: Notes:
1357: The returned number is up-to-date without need for `PetscSectionSetUp()`.
1359: This is the maximum over all points of the sum of the number of dof in the unnamed default field plus all named fields. This is equivalent to
1360: the maximum over all points of the value returned by `PetscSectionGetDof()` on this MPI process
1362: Developer Notes:
1363: The returned number is calculated lazily and stashed.
1365: A call to `PetscSectionInvalidateMaxDof_Internal()` invalidates the stashed value.
1367: `PetscSectionInvalidateMaxDof_Internal()` is called in `PetscSectionSetDof()`, `PetscSectionAddDof()` and `PetscSectionReset()`
1369: It should also be called every time `atlasDof` is modified directly.
1371: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetDof()`, `PetscSectionAddDof()`, `PetscSectionCreate()`
1372: @*/
1373: PetscErrorCode PetscSectionGetMaxDof(PetscSection s, PetscInt *maxDof)
1374: {
1375: PetscInt p;
1377: PetscFunctionBegin;
1379: PetscAssertPointer(maxDof, 2);
1380: if (s->maxDof == PETSC_INT_MIN) {
1381: s->maxDof = 0;
1382: for (p = 0; p < s->pEnd - s->pStart; ++p) s->maxDof = PetscMax(s->maxDof, s->atlasDof[p]);
1383: }
1384: *maxDof = s->maxDof;
1385: PetscFunctionReturn(PETSC_SUCCESS);
1386: }
1388: /*@
1389: PetscSectionGetStorageSize - Return the size of an array or local `Vec` capable of holding all the degrees of freedom defined in a `PetscSection`
1391: Not Collective
1393: Input Parameter:
1394: . s - the `PetscSection`
1396: Output Parameter:
1397: . size - the size of an array which can hold all the dofs
1399: Level: intermediate
1401: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionGetConstrainedStorageSize()`, `PetscSectionCreate()`
1402: @*/
1403: PetscErrorCode PetscSectionGetStorageSize(PetscSection s, PetscInt *size)
1404: {
1405: PetscInt64 n = 0;
1407: PetscFunctionBegin;
1409: PetscAssertPointer(size, 2);
1410: for (PetscInt p = 0; p < s->pEnd - s->pStart; ++p) n += s->atlasDof[p] > 0 ? s->atlasDof[p] : 0;
1411: PetscCall(PetscIntCast(n, size));
1412: PetscFunctionReturn(PETSC_SUCCESS);
1413: }
1415: /*@
1416: PetscSectionGetConstrainedStorageSize - Return the size of an array or local `Vec` capable of holding all unconstrained degrees of freedom in a `PetscSection`
1418: Not Collective
1420: Input Parameter:
1421: . s - the `PetscSection`
1423: Output Parameter:
1424: . size - the size of an array which can hold all unconstrained dofs
1426: Level: intermediate
1428: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetStorageSize()`, `PetscSectionGetOffset()`, `PetscSectionCreate()`
1429: @*/
1430: PetscErrorCode PetscSectionGetConstrainedStorageSize(PetscSection s, PetscInt *size)
1431: {
1432: PetscInt64 n = 0;
1434: PetscFunctionBegin;
1436: PetscAssertPointer(size, 2);
1437: for (PetscInt p = 0; p < s->pEnd - s->pStart; ++p) {
1438: const PetscInt cdof = s->bc ? s->bc->atlasDof[p] : 0;
1439: n += s->atlasDof[p] > 0 ? s->atlasDof[p] - cdof : 0;
1440: }
1441: PetscCall(PetscIntCast(n, size));
1442: PetscFunctionReturn(PETSC_SUCCESS);
1443: }
1445: /*@
1446: PetscSectionCreateGlobalSection - Create a parallel section describing the global layout using
1447: a local (sequential) `PetscSection` on each MPI process and a `PetscSF` describing the section point overlap.
1449: Input Parameters:
1450: + s - The `PetscSection` for the local field layout
1451: . sf - The `PetscSF` describing parallel layout of the section points (leaves are unowned local points)
1452: . usePermutation - By default this is `PETSC_TRUE`, meaning any permutation of the local section is transferred to the global section
1453: . includeConstraints - By default this is `PETSC_FALSE`, meaning that the global field vector will not possess constrained dofs
1454: - localOffsets - If `PETSC_TRUE`, use local rather than global offsets for the points
1456: Output Parameter:
1457: . gsection - The `PetscSection` for the global field layout
1459: Level: intermediate
1461: Notes:
1462: On each MPI process `gsection` inherits the chart of the `s` on that process.
1464: This sets negative sizes and offsets to points not owned by this process as defined by `sf` but that are within the local value of the chart of `gsection`.
1465: In those locations the value of size is -(size+1) and the value of the offset on the remote process is -(off+1).
1467: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionCreateGlobalSectionCensored()`
1468: @*/
1469: PetscErrorCode PetscSectionCreateGlobalSection(PetscSection s, PetscSF sf, PetscBool usePermutation, PetscBool includeConstraints, PetscBool localOffsets, PetscSection *gsection)
1470: {
1471: PetscSection gs;
1472: const PetscInt *pind = NULL;
1473: PetscInt *recv = NULL, *neg = NULL;
1474: PetscInt pStart, pEnd, p, dof, cdof, off, globalOff = 0, nroots, nlocal, maxleaf;
1475: PetscInt numFields, f, numComponents;
1476: PetscInt foff;
1478: PetscFunctionBegin;
1484: PetscAssertPointer(gsection, 6);
1485: PetscCheck(s->pointMajor, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for field major ordering");
1486: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &gs));
1487: PetscCall(PetscSectionGetNumFields(s, &numFields));
1488: if (numFields > 0) PetscCall(PetscSectionSetNumFields(gs, numFields));
1489: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
1490: PetscCall(PetscSectionSetChart(gs, pStart, pEnd));
1491: gs->includesConstraints = includeConstraints;
1492: PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL));
1493: nlocal = nroots; /* The local/leaf space matches global/root space */
1494: /* Must allocate for all points visible to SF, which may be more than this section */
1495: if (nroots >= 0) { /* nroots < 0 means that the graph has not been set, only happens in serial */
1496: PetscCall(PetscSFGetLeafRange(sf, NULL, &maxleaf));
1497: PetscCheck(nroots >= pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "SF roots %" PetscInt_FMT " < pEnd %" PetscInt_FMT, nroots, pEnd);
1498: PetscCheck(maxleaf < nroots, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Max local leaf %" PetscInt_FMT " >= nroots %" PetscInt_FMT, maxleaf, nroots);
1499: PetscCall(PetscMalloc2(nroots, &neg, nlocal, &recv));
1500: PetscCall(PetscArrayzero(neg, nroots));
1501: }
1502: /* Mark all local points with negative dof */
1503: for (p = pStart; p < pEnd; ++p) {
1504: PetscCall(PetscSectionGetDof(s, p, &dof));
1505: PetscCall(PetscSectionSetDof(gs, p, dof));
1506: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
1507: if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetConstraintDof(gs, p, cdof));
1508: if (neg) neg[p] = -(dof + 1);
1509: }
1510: PetscCall(PetscSectionSetUpBC(gs));
1511: if (gs->bcIndices) PetscCall(PetscArraycpy(gs->bcIndices, s->bcIndices, gs->bc->atlasOff[gs->bc->pEnd - gs->bc->pStart - 1] + gs->bc->atlasDof[gs->bc->pEnd - gs->bc->pStart - 1]));
1512: if (nroots >= 0) {
1513: PetscCall(PetscArrayzero(recv, nlocal));
1514: PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, recv, MPI_REPLACE));
1515: PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, recv, MPI_REPLACE));
1516: for (p = pStart; p < pEnd; ++p) {
1517: if (recv[p] < 0) {
1518: gs->atlasDof[p - pStart] = recv[p];
1519: PetscCall(PetscSectionGetDof(s, p, &dof));
1520: PetscCheck(-(recv[p] + 1) == dof, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " is not the unconstrained %" PetscInt_FMT, -(recv[p] + 1), p, dof);
1521: }
1522: }
1523: }
1524: /* Calculate new sizes, get process offset, and calculate point offsets */
1525: if (usePermutation && s->perm) PetscCall(ISGetIndices(s->perm, &pind));
1526: for (p = 0, off = 0; p < pEnd - pStart; ++p) {
1527: const PetscInt q = pind ? pind[p] : p;
1529: cdof = (!includeConstraints && s->bc) ? s->bc->atlasDof[q] : 0;
1530: gs->atlasOff[q] = off;
1531: off += gs->atlasDof[q] > 0 ? gs->atlasDof[q] - cdof : 0;
1532: }
1533: if (!localOffsets) {
1534: PetscCallMPI(MPI_Scan(&off, &globalOff, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)s)));
1535: globalOff -= off;
1536: }
1537: for (p = pStart, off = 0; p < pEnd; ++p) {
1538: gs->atlasOff[p - pStart] += globalOff;
1539: if (neg) neg[p] = -(gs->atlasOff[p - pStart] + 1);
1540: }
1541: if (usePermutation && s->perm) PetscCall(ISRestoreIndices(s->perm, &pind));
1542: /* Put in negative offsets for ghost points */
1543: if (nroots >= 0) {
1544: PetscCall(PetscArrayzero(recv, nlocal));
1545: PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, recv, MPI_REPLACE));
1546: PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, recv, MPI_REPLACE));
1547: for (p = pStart; p < pEnd; ++p) {
1548: if (recv[p] < 0) gs->atlasOff[p - pStart] = recv[p];
1549: }
1550: }
1551: PetscCall(PetscFree2(neg, recv));
1552: /* Set field dofs/offsets/constraints */
1553: for (f = 0; f < numFields; ++f) {
1554: const char *name;
1556: gs->field[f]->includesConstraints = includeConstraints;
1557: PetscCall(PetscSectionGetFieldComponents(s, f, &numComponents));
1558: PetscCall(PetscSectionSetFieldComponents(gs, f, numComponents));
1559: PetscCall(PetscSectionGetFieldName(s, f, &name));
1560: PetscCall(PetscSectionSetFieldName(gs, f, name));
1561: }
1562: for (p = pStart; p < pEnd; ++p) {
1563: PetscCall(PetscSectionGetOffset(gs, p, &off));
1564: for (f = 0, foff = off; f < numFields; ++f) {
1565: PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof));
1566: if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetFieldConstraintDof(gs, p, f, cdof));
1567: PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
1568: PetscCall(PetscSectionSetFieldDof(gs, p, f, off < 0 ? -(dof + 1) : dof));
1569: PetscCall(PetscSectionSetFieldOffset(gs, p, f, foff));
1570: PetscCall(PetscSectionGetFieldConstraintDof(gs, p, f, &cdof));
1571: foff = off < 0 ? foff - (dof - cdof) : foff + (dof - cdof);
1572: }
1573: }
1574: for (f = 0; f < numFields; ++f) {
1575: PetscSection gfs = gs->field[f];
1577: PetscCall(PetscSectionSetUpBC(gfs));
1578: if (gfs->bcIndices) PetscCall(PetscArraycpy(gfs->bcIndices, s->field[f]->bcIndices, gfs->bc->atlasOff[gfs->bc->pEnd - gfs->bc->pStart - 1] + gfs->bc->atlasDof[gfs->bc->pEnd - gfs->bc->pStart - 1]));
1579: }
1580: gs->setup = PETSC_TRUE;
1581: PetscCall(PetscSectionViewFromOptions(gs, NULL, "-global_section_view"));
1582: *gsection = gs;
1583: PetscFunctionReturn(PETSC_SUCCESS);
1584: }
1586: /*@
1587: PetscSectionCreateGlobalSectionCensored - Create a `PetscSection` describing the globallayout using
1588: a local (sequential) `PetscSection` on each MPI process and an `PetscSF` describing the section point overlap.
1590: Input Parameters:
1591: + s - The `PetscSection` for the local field layout
1592: . sf - The `PetscSF` describing parallel layout of the section points
1593: . includeConstraints - By default this is `PETSC_FALSE`, meaning that the global vector will not possess constrained dofs
1594: . numExcludes - The number of exclusion ranges, this must have the same value on all MPI processes
1595: - excludes - An array [start_0, end_0, start_1, end_1, ...] where there are `numExcludes` pairs and must have the same values on all MPI processes
1597: Output Parameter:
1598: . gsection - The `PetscSection` for the global field layout
1600: Level: advanced
1602: Notes:
1603: On each MPI process `gsection` inherits the chart of the `s` on that process.
1605: This sets negative sizes and offsets to points not owned by this process as defined by `sf` but that are within the local value of the chart of `gsection`.
1606: In those locations the value of size is -(size+1) and the value of the offset on the remote process is -(off+1).
1608: This routine augments `PetscSectionCreateGlobalSection()` by allowing one to exclude certain ranges in the chart of the `PetscSection`
1610: Developer Notes:
1611: This is a terrible function name
1613: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`
1614: @*/
1615: PetscErrorCode PetscSectionCreateGlobalSectionCensored(PetscSection s, PetscSF sf, PetscBool includeConstraints, PetscInt numExcludes, const PetscInt excludes[], PetscSection *gsection)
1616: {
1617: const PetscInt *pind = NULL;
1618: PetscInt *neg = NULL, *tmpOff = NULL;
1619: PetscInt pStart, pEnd, p, e, dof, cdof, globalOff = 0, nroots;
1620: PetscInt off;
1622: PetscFunctionBegin;
1625: PetscAssertPointer(gsection, 6);
1626: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), gsection));
1627: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
1628: PetscCall(PetscSectionSetChart(*gsection, pStart, pEnd));
1629: PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL));
1630: if (nroots >= 0) {
1631: PetscCheck(nroots >= pEnd - pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "PetscSF nroots %" PetscInt_FMT " < %" PetscInt_FMT " section size", nroots, pEnd - pStart);
1632: PetscCall(PetscCalloc1(nroots, &neg));
1633: if (nroots > pEnd - pStart) {
1634: PetscCall(PetscCalloc1(nroots, &tmpOff));
1635: } else {
1636: tmpOff = &(*gsection)->atlasDof[-pStart];
1637: }
1638: }
1639: /* Mark ghost points with negative dof */
1640: for (p = pStart; p < pEnd; ++p) {
1641: for (e = 0; e < numExcludes; ++e) {
1642: if ((p >= excludes[e * 2 + 0]) && (p < excludes[e * 2 + 1])) {
1643: PetscCall(PetscSectionSetDof(*gsection, p, 0));
1644: break;
1645: }
1646: }
1647: if (e < numExcludes) continue;
1648: PetscCall(PetscSectionGetDof(s, p, &dof));
1649: PetscCall(PetscSectionSetDof(*gsection, p, dof));
1650: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
1651: if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetConstraintDof(*gsection, p, cdof));
1652: if (neg) neg[p] = -(dof + 1);
1653: }
1654: PetscCall(PetscSectionSetUpBC(*gsection));
1655: if (nroots >= 0) {
1656: PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE));
1657: PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE));
1658: if (nroots > pEnd - pStart) {
1659: for (p = pStart; p < pEnd; ++p) {
1660: if (tmpOff[p] < 0) (*gsection)->atlasDof[p - pStart] = tmpOff[p];
1661: }
1662: }
1663: }
1664: /* Calculate new sizes, get process offset, and calculate point offsets */
1665: if (s->perm) PetscCall(ISGetIndices(s->perm, &pind));
1666: for (p = 0, off = 0; p < pEnd - pStart; ++p) {
1667: const PetscInt q = pind ? pind[p] : p;
1669: cdof = (!includeConstraints && s->bc) ? s->bc->atlasDof[q] : 0;
1670: (*gsection)->atlasOff[q] = off;
1671: off += (*gsection)->atlasDof[q] > 0 ? (*gsection)->atlasDof[q] - cdof : 0;
1672: }
1673: PetscCallMPI(MPI_Scan(&off, &globalOff, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)s)));
1674: globalOff -= off;
1675: for (p = 0, off = 0; p < pEnd - pStart; ++p) {
1676: (*gsection)->atlasOff[p] += globalOff;
1677: if (neg) neg[p + pStart] = -((*gsection)->atlasOff[p] + 1);
1678: }
1679: if (s->perm) PetscCall(ISRestoreIndices(s->perm, &pind));
1680: /* Put in negative offsets for ghost points */
1681: if (nroots >= 0) {
1682: if (nroots == pEnd - pStart) tmpOff = &(*gsection)->atlasOff[-pStart];
1683: PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE));
1684: PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE));
1685: if (nroots > pEnd - pStart) {
1686: for (p = pStart; p < pEnd; ++p) {
1687: if (tmpOff[p] < 0) (*gsection)->atlasOff[p - pStart] = tmpOff[p];
1688: }
1689: }
1690: }
1691: if (nroots >= 0 && nroots > pEnd - pStart) PetscCall(PetscFree(tmpOff));
1692: PetscCall(PetscFree(neg));
1693: PetscFunctionReturn(PETSC_SUCCESS);
1694: }
1696: /*@
1697: PetscSectionGetPointLayout - Get a `PetscLayout` for the points with nonzero dof counts of the unnamed default field within this `PetscSection`s local chart
1699: Collective
1701: Input Parameters:
1702: + comm - The `MPI_Comm`
1703: - s - The `PetscSection`
1705: Output Parameter:
1706: . layout - The point layout for the data that defines the section
1708: Level: advanced
1710: Notes:
1711: `PetscSectionGetValueLayout()` provides similar information but counting the total number of degrees of freedom on the MPI process (excluding constrained
1712: degrees of freedom).
1714: This count includes constrained degrees of freedom
1716: This is usually called on the default global section.
1718: Example:
1719: .vb
1720: The chart is [2,5), point 2 has 2 dof, point 3 has 0 dof, point 4 has 1 dof
1721: The local size of the `PetscLayout` is 2 since 2 points have a non-zero number of dof
1722: .ve
1724: Developer Notes:
1725: I find the names of these two functions extremely non-informative
1727: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetValueLayout()`, `PetscSectionCreate()`
1728: @*/
1729: PetscErrorCode PetscSectionGetPointLayout(MPI_Comm comm, PetscSection s, PetscLayout *layout)
1730: {
1731: PetscInt pStart, pEnd, p, localSize = 0;
1733: PetscFunctionBegin;
1734: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
1735: for (p = pStart; p < pEnd; ++p) {
1736: PetscInt dof;
1738: PetscCall(PetscSectionGetDof(s, p, &dof));
1739: if (dof >= 0) ++localSize;
1740: }
1741: PetscCall(PetscLayoutCreate(comm, layout));
1742: PetscCall(PetscLayoutSetLocalSize(*layout, localSize));
1743: PetscCall(PetscLayoutSetBlockSize(*layout, 1));
1744: PetscCall(PetscLayoutSetUp(*layout));
1745: PetscFunctionReturn(PETSC_SUCCESS);
1746: }
1748: /*@
1749: PetscSectionGetValueLayout - Get the `PetscLayout` associated with the section dofs of a `PetscSection`
1751: Collective
1753: Input Parameters:
1754: + comm - The `MPI_Comm`
1755: - s - The `PetscSection`
1757: Output Parameter:
1758: . layout - The dof layout for the section
1760: Level: advanced
1762: Notes:
1763: `PetscSectionGetPointLayout()` provides similar information but only counting the number of points with nonzero degrees of freedom and
1764: including the constrained degrees of freedom
1766: This is usually called for the default global section.
1768: Example:
1769: .vb
1770: The chart is [2,5), point 2 has 4 dof (2 constrained), point 3 has 0 dof, point 4 has 1 dof (not constrained)
1771: The local size of the `PetscLayout` is 3 since there are 3 unconstrained degrees of freedom on this MPI process
1772: .ve
1774: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetPointLayout()`, `PetscSectionCreate()`
1775: @*/
1776: PetscErrorCode PetscSectionGetValueLayout(MPI_Comm comm, PetscSection s, PetscLayout *layout)
1777: {
1778: PetscInt pStart, pEnd, p, localSize = 0;
1780: PetscFunctionBegin;
1782: PetscAssertPointer(layout, 3);
1783: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
1784: for (p = pStart; p < pEnd; ++p) {
1785: PetscInt dof, cdof;
1787: PetscCall(PetscSectionGetDof(s, p, &dof));
1788: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
1789: if (dof - cdof > 0) localSize += dof - cdof;
1790: }
1791: PetscCall(PetscLayoutCreate(comm, layout));
1792: PetscCall(PetscLayoutSetLocalSize(*layout, localSize));
1793: PetscCall(PetscLayoutSetBlockSize(*layout, 1));
1794: PetscCall(PetscLayoutSetUp(*layout));
1795: PetscFunctionReturn(PETSC_SUCCESS);
1796: }
1798: /*@
1799: PetscSectionGetOffset - Return the offset into an array or `Vec` for the dof associated with the given point.
1801: Not Collective
1803: Input Parameters:
1804: + s - the `PetscSection`
1805: - point - the point
1807: Output Parameter:
1808: . offset - the offset
1810: Level: intermediate
1812: Notes:
1813: In a global section, `offset` will be negative for points not owned by this process.
1815: This is for the unnamed default field in the `PetscSection` not the named fields
1817: The `offset` values are different depending on a value set with `PetscSectionSetPointMajor()`
1819: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionCreate()`, `PetscSectionSetPointMajor()`
1820: @*/
1821: PetscErrorCode PetscSectionGetOffset(PetscSection s, PetscInt point, PetscInt *offset)
1822: {
1823: PetscFunctionBegin;
1825: PetscAssertPointer(offset, 3);
1826: PetscAssert(!(point < s->pStart) && !(point >= s->pEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd);
1827: *offset = s->atlasOff[point - s->pStart];
1828: PetscFunctionReturn(PETSC_SUCCESS);
1829: }
1831: /*@
1832: PetscSectionSetOffset - Set the offset into an array or `Vec` for the dof associated with the given point.
1834: Not Collective
1836: Input Parameters:
1837: + s - the `PetscSection`
1838: . point - the point
1839: - offset - the offset, these values may be negative indicating the values are off process
1841: Level: developer
1843: Note:
1844: The user usually does not call this function, but uses `PetscSectionSetUp()`
1846: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionCreate()`, `PetscSectionSetUp()`
1847: @*/
1848: PetscErrorCode PetscSectionSetOffset(PetscSection s, PetscInt point, PetscInt offset)
1849: {
1850: PetscFunctionBegin;
1852: PetscCheck(!(point < s->pStart) && !(point >= s->pEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd);
1853: s->atlasOff[point - s->pStart] = offset;
1854: PetscFunctionReturn(PETSC_SUCCESS);
1855: }
1857: /*@
1858: PetscSectionGetFieldOffset - Return the offset into an array or `Vec` for the field dof associated with the given point.
1860: Not Collective
1862: Input Parameters:
1863: + s - the `PetscSection`
1864: . point - the point
1865: - field - the field
1867: Output Parameter:
1868: . offset - the offset
1870: Level: intermediate
1872: Notes:
1873: In a global section, `offset` will be negative for points not owned by this process.
1875: The `offset` values are different depending on a value set with `PetscSectionSetPointMajor()`
1877: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()`, `PetscSectionGetFieldPointOffset()`
1878: @*/
1879: PetscErrorCode PetscSectionGetFieldOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt *offset)
1880: {
1881: PetscFunctionBegin;
1883: PetscAssertPointer(offset, 4);
1884: PetscSectionCheckValidField(field, s->numFields);
1885: PetscCall(PetscSectionGetOffset(s->field[field], point, offset));
1886: PetscFunctionReturn(PETSC_SUCCESS);
1887: }
1889: /*@
1890: PetscSectionSetFieldOffset - Set the offset into an array or `Vec` for the dof associated with the given field at a point.
1892: Not Collective
1894: Input Parameters:
1895: + s - the `PetscSection`
1896: . point - the point
1897: . field - the field
1898: - offset - the offset, these values may be negative indicating the values are off process
1900: Level: developer
1902: Note:
1903: The user usually does not call this function, but uses `PetscSectionSetUp()`
1905: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionSetOffset()`, `PetscSectionCreate()`, `PetscSectionSetUp()`
1906: @*/
1907: PetscErrorCode PetscSectionSetFieldOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt offset)
1908: {
1909: PetscFunctionBegin;
1911: PetscSectionCheckValidField(field, s->numFields);
1912: PetscCall(PetscSectionSetOffset(s->field[field], point, offset));
1913: PetscFunctionReturn(PETSC_SUCCESS);
1914: }
1916: /*@
1917: PetscSectionGetFieldPointOffset - Return the offset for the first field dof associated with the given point relative to the offset for that point for the
1918: unnamed default field's first dof
1920: Not Collective
1922: Input Parameters:
1923: + s - the `PetscSection`
1924: . point - the point
1925: - field - the field
1927: Output Parameter:
1928: . offset - the offset
1930: Level: advanced
1932: Note:
1933: This ignores constraints
1935: Example:
1936: .vb
1937: if PetscSectionSetPointMajor(s,PETSC_TRUE)
1938: The unnamed default field has 3 dof at `point`
1939: Field 0 has 2 dof at `point`
1940: Then PetscSectionGetFieldPointOffset(s,point,1,&offset) returns and offset of 5
1941: .ve
1943: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()`, `PetscSectionGetFieldOffset()`
1944: @*/
1945: PetscErrorCode PetscSectionGetFieldPointOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt *offset)
1946: {
1947: PetscInt off, foff;
1949: PetscFunctionBegin;
1951: PetscAssertPointer(offset, 4);
1952: PetscSectionCheckValidField(field, s->numFields);
1953: PetscCall(PetscSectionGetOffset(s, point, &off));
1954: PetscCall(PetscSectionGetOffset(s->field[field], point, &foff));
1955: *offset = foff - off;
1956: PetscFunctionReturn(PETSC_SUCCESS);
1957: }
1959: /*@
1960: PetscSectionGetOffsetRange - Return the full range of offsets [`start`, `end`) for a `PetscSection`
1962: Not Collective
1964: Input Parameter:
1965: . s - the `PetscSection`
1967: Output Parameters:
1968: + start - the minimum offset
1969: - end - one more than the maximum offset
1971: Level: intermediate
1973: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()`
1974: @*/
1975: PetscErrorCode PetscSectionGetOffsetRange(PetscSection s, PetscInt *start, PetscInt *end)
1976: {
1977: PetscInt os = 0, oe = 0, pStart, pEnd, p;
1979: PetscFunctionBegin;
1981: if (s->atlasOff) {
1982: os = s->atlasOff[0];
1983: oe = s->atlasOff[0];
1984: }
1985: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
1986: for (p = 0; p < pEnd - pStart; ++p) {
1987: PetscInt dof = s->atlasDof[p], off = s->atlasOff[p];
1989: if (off >= 0) {
1990: os = PetscMin(os, off);
1991: oe = PetscMax(oe, off + dof);
1992: }
1993: }
1994: if (start) *start = os;
1995: if (end) *end = oe;
1996: PetscFunctionReturn(PETSC_SUCCESS);
1997: }
1999: /*@
2000: PetscSectionCreateSubsection - Create a new, smaller `PetscSection` composed of only selected fields
2002: Collective
2004: Input Parameters:
2005: + s - the `PetscSection`
2006: . len - the number of subfields
2007: - fields - the subfield numbers
2009: Output Parameter:
2010: . subs - the subsection
2012: Level: advanced
2014: Notes:
2015: The chart of `subs` is the same as the chart of `s`
2017: This will error if a fieldnumber is out of range
2019: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSupersection()`, `PetscSectionCreate()`
2020: @*/
2021: PetscErrorCode PetscSectionCreateSubsection(PetscSection s, PetscInt len, const PetscInt fields[], PetscSection *subs)
2022: {
2023: PetscInt nF, f, c, pStart, pEnd, p, maxCdof = 0;
2025: PetscFunctionBegin;
2026: if (!len) PetscFunctionReturn(PETSC_SUCCESS);
2028: PetscAssertPointer(fields, 3);
2029: PetscAssertPointer(subs, 4);
2030: PetscCall(PetscSectionGetNumFields(s, &nF));
2031: PetscCheck(len <= nF, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONG, "Number of requested fields %" PetscInt_FMT " greater than number of fields %" PetscInt_FMT, len, nF);
2032: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), subs));
2033: PetscCall(PetscSectionSetNumFields(*subs, len));
2034: for (f = 0; f < len; ++f) {
2035: const char *name = NULL;
2036: PetscInt numComp = 0;
2037: PetscSectionSym sym;
2039: PetscCall(PetscSectionGetFieldName(s, fields[f], &name));
2040: PetscCall(PetscSectionSetFieldName(*subs, f, name));
2041: PetscCall(PetscSectionGetFieldComponents(s, fields[f], &numComp));
2042: PetscCall(PetscSectionSetFieldComponents(*subs, f, numComp));
2043: for (c = 0; c < s->numFieldComponents[fields[f]]; ++c) {
2044: PetscCall(PetscSectionGetComponentName(s, fields[f], c, &name));
2045: PetscCall(PetscSectionSetComponentName(*subs, f, c, name));
2046: }
2047: PetscCall(PetscSectionGetFieldSym(s, fields[f], &sym));
2048: PetscCall(PetscSectionSetFieldSym(*subs, f, sym));
2049: }
2050: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2051: PetscCall(PetscSectionSetChart(*subs, pStart, pEnd));
2052: for (p = pStart; p < pEnd; ++p) {
2053: PetscInt dof = 0, cdof = 0, fdof = 0, cfdof = 0;
2055: for (f = 0; f < len; ++f) {
2056: PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof));
2057: PetscCall(PetscSectionSetFieldDof(*subs, p, f, fdof));
2058: PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &cfdof));
2059: if (cfdof) PetscCall(PetscSectionSetFieldConstraintDof(*subs, p, f, cfdof));
2060: dof += fdof;
2061: cdof += cfdof;
2062: }
2063: PetscCall(PetscSectionSetDof(*subs, p, dof));
2064: if (cdof) PetscCall(PetscSectionSetConstraintDof(*subs, p, cdof));
2065: maxCdof = PetscMax(cdof, maxCdof);
2066: }
2067: PetscCall(PetscSectionSetUp(*subs));
2068: if (maxCdof) {
2069: PetscInt *indices;
2071: PetscCall(PetscMalloc1(maxCdof, &indices));
2072: for (p = pStart; p < pEnd; ++p) {
2073: PetscInt cdof;
2075: PetscCall(PetscSectionGetConstraintDof(*subs, p, &cdof));
2076: if (cdof) {
2077: const PetscInt *oldIndices = NULL;
2078: PetscInt fdof = 0, cfdof = 0, fc, numConst = 0, fOff = 0;
2080: for (f = 0; f < len; ++f) {
2081: PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof));
2082: PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &cfdof));
2083: PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &oldIndices));
2084: PetscCall(PetscSectionSetFieldConstraintIndices(*subs, p, f, oldIndices));
2085: for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] = oldIndices[fc] + fOff;
2086: numConst += cfdof;
2087: fOff += fdof;
2088: }
2089: PetscCall(PetscSectionSetConstraintIndices(*subs, p, indices));
2090: }
2091: }
2092: PetscCall(PetscFree(indices));
2093: }
2094: PetscFunctionReturn(PETSC_SUCCESS);
2095: }
2097: /*@
2098: PetscSectionCreateComponentSubsection - Create a new, smaller `PetscSection` composed of only selected components
2100: Collective
2102: Input Parameters:
2103: + s - the `PetscSection`
2104: . len - the number of components
2105: - comps - the component numbers
2107: Output Parameter:
2108: . subs - the subsection
2110: Level: advanced
2112: Notes:
2113: The chart of `subs` is the same as the chart of `s`
2115: This will error if the section has more than one field, or if a component number is out of range
2117: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSupersection()`, `PetscSectionCreate()`
2118: @*/
2119: PetscErrorCode PetscSectionCreateComponentSubsection(PetscSection s, PetscInt len, const PetscInt comps[], PetscSection *subs)
2120: {
2121: PetscSectionSym sym;
2122: const char *name = NULL;
2123: PetscInt Nf, pStart, pEnd;
2125: PetscFunctionBegin;
2126: if (!len) PetscFunctionReturn(PETSC_SUCCESS);
2128: PetscAssertPointer(comps, 3);
2129: PetscAssertPointer(subs, 4);
2130: PetscCall(PetscSectionGetNumFields(s, &Nf));
2131: PetscCheck(Nf == 1, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONG, "This method can only handle one field, not %" PetscInt_FMT, Nf);
2132: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), subs));
2133: PetscCall(PetscSectionSetNumFields(*subs, 1));
2134: PetscCall(PetscSectionGetFieldName(s, 0, &name));
2135: PetscCall(PetscSectionSetFieldName(*subs, 0, name));
2136: PetscCall(PetscSectionSetFieldComponents(*subs, 0, len));
2137: PetscCall(PetscSectionGetFieldSym(s, 0, &sym));
2138: PetscCall(PetscSectionSetFieldSym(*subs, 0, sym));
2139: for (PetscInt c = 0; c < len; ++c) {
2140: PetscCall(PetscSectionGetComponentName(s, 0, comps[c], &name));
2141: PetscCall(PetscSectionSetComponentName(*subs, 0, c, name));
2142: }
2143: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2144: PetscCall(PetscSectionSetChart(*subs, pStart, pEnd));
2145: for (PetscInt p = pStart; p < pEnd; ++p) {
2146: PetscInt dof, cdof, cfdof;
2148: PetscCall(PetscSectionGetDof(s, p, &dof));
2149: if (!dof) continue;
2150: PetscCall(PetscSectionGetFieldConstraintDof(s, p, 0, &cfdof));
2151: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
2152: PetscCheck(!cdof && !cfdof, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Component selection does not work with constraints");
2153: PetscCall(PetscSectionSetFieldDof(*subs, p, 0, len));
2154: PetscCall(PetscSectionSetDof(*subs, p, len));
2155: }
2156: PetscCall(PetscSectionSetUp(*subs));
2157: PetscFunctionReturn(PETSC_SUCCESS);
2158: }
2160: /*@
2161: PetscSectionCreateSupersection - Create a new, larger section composed of multiple `PetscSection`s
2163: Collective
2165: Input Parameters:
2166: + s - the input sections
2167: - len - the number of input sections
2169: Output Parameter:
2170: . supers - the supersection
2172: Level: advanced
2174: Notes:
2175: The section offsets now refer to a new, larger vector.
2177: Developer Notes:
2178: Needs to explain how the sections are composed
2180: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubsection()`, `PetscSectionCreate()`
2181: @*/
2182: PetscErrorCode PetscSectionCreateSupersection(PetscSection s[], PetscInt len, PetscSection *supers)
2183: {
2184: PetscInt Nf = 0, f, pStart = PETSC_INT_MAX, pEnd = 0, p, maxCdof = 0, i;
2186: PetscFunctionBegin;
2187: if (!len) PetscFunctionReturn(PETSC_SUCCESS);
2188: for (i = 0; i < len; ++i) {
2189: PetscInt nf, pStarti, pEndi;
2191: PetscCall(PetscSectionGetNumFields(s[i], &nf));
2192: PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi));
2193: pStart = PetscMin(pStart, pStarti);
2194: pEnd = PetscMax(pEnd, pEndi);
2195: Nf += nf;
2196: }
2197: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s[0]), supers));
2198: PetscCall(PetscSectionSetNumFields(*supers, Nf));
2199: for (i = 0, f = 0; i < len; ++i) {
2200: PetscInt nf, fi, ci;
2202: PetscCall(PetscSectionGetNumFields(s[i], &nf));
2203: for (fi = 0; fi < nf; ++fi, ++f) {
2204: const char *name = NULL;
2205: PetscInt numComp = 0;
2207: PetscCall(PetscSectionGetFieldName(s[i], fi, &name));
2208: PetscCall(PetscSectionSetFieldName(*supers, f, name));
2209: PetscCall(PetscSectionGetFieldComponents(s[i], fi, &numComp));
2210: PetscCall(PetscSectionSetFieldComponents(*supers, f, numComp));
2211: for (ci = 0; ci < s[i]->numFieldComponents[fi]; ++ci) {
2212: PetscCall(PetscSectionGetComponentName(s[i], fi, ci, &name));
2213: PetscCall(PetscSectionSetComponentName(*supers, f, ci, name));
2214: }
2215: }
2216: }
2217: PetscCall(PetscSectionSetChart(*supers, pStart, pEnd));
2218: for (p = pStart; p < pEnd; ++p) {
2219: PetscInt dof = 0, cdof = 0;
2221: for (i = 0, f = 0; i < len; ++i) {
2222: PetscInt nf, fi, pStarti, pEndi;
2223: PetscInt fdof = 0, cfdof = 0;
2225: PetscCall(PetscSectionGetNumFields(s[i], &nf));
2226: PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi));
2227: if ((p < pStarti) || (p >= pEndi)) continue;
2228: for (fi = 0; fi < nf; ++fi, ++f) {
2229: PetscCall(PetscSectionGetFieldDof(s[i], p, fi, &fdof));
2230: PetscCall(PetscSectionAddFieldDof(*supers, p, f, fdof));
2231: PetscCall(PetscSectionGetFieldConstraintDof(s[i], p, fi, &cfdof));
2232: if (cfdof) PetscCall(PetscSectionAddFieldConstraintDof(*supers, p, f, cfdof));
2233: dof += fdof;
2234: cdof += cfdof;
2235: }
2236: }
2237: PetscCall(PetscSectionSetDof(*supers, p, dof));
2238: if (cdof) PetscCall(PetscSectionSetConstraintDof(*supers, p, cdof));
2239: maxCdof = PetscMax(cdof, maxCdof);
2240: }
2241: PetscCall(PetscSectionSetUp(*supers));
2242: if (maxCdof) {
2243: PetscInt *indices;
2245: PetscCall(PetscMalloc1(maxCdof, &indices));
2246: for (p = pStart; p < pEnd; ++p) {
2247: PetscInt cdof;
2249: PetscCall(PetscSectionGetConstraintDof(*supers, p, &cdof));
2250: if (cdof) {
2251: PetscInt dof, numConst = 0, fOff = 0;
2253: for (i = 0, f = 0; i < len; ++i) {
2254: const PetscInt *oldIndices = NULL;
2255: PetscInt nf, fi, pStarti, pEndi, fdof, cfdof, fc;
2257: PetscCall(PetscSectionGetNumFields(s[i], &nf));
2258: PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi));
2259: if ((p < pStarti) || (p >= pEndi)) continue;
2260: for (fi = 0; fi < nf; ++fi, ++f) {
2261: PetscCall(PetscSectionGetFieldDof(s[i], p, fi, &fdof));
2262: PetscCall(PetscSectionGetFieldConstraintDof(s[i], p, fi, &cfdof));
2263: PetscCall(PetscSectionGetFieldConstraintIndices(s[i], p, fi, &oldIndices));
2264: for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] = oldIndices[fc];
2265: PetscCall(PetscSectionSetFieldConstraintIndices(*supers, p, f, &indices[numConst]));
2266: for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] += fOff;
2267: numConst += cfdof;
2268: }
2269: PetscCall(PetscSectionGetDof(s[i], p, &dof));
2270: fOff += dof;
2271: }
2272: PetscCall(PetscSectionSetConstraintIndices(*supers, p, indices));
2273: }
2274: }
2275: PetscCall(PetscFree(indices));
2276: }
2277: PetscFunctionReturn(PETSC_SUCCESS);
2278: }
2280: static PetscErrorCode PetscSectionCreateSubplexSection_Private(PetscSection s, IS subpointIS, PetscBool renumberPoints, PetscSection *subs)
2281: {
2282: const PetscInt *points = NULL, *indices = NULL;
2283: PetscInt *spoints = NULL, *order = NULL;
2284: PetscInt numFields, f, c, numSubpoints = 0, pStart, pEnd, p, spStart, spEnd, subp;
2286: PetscFunctionBegin;
2289: PetscAssertPointer(subs, 4);
2290: PetscCall(PetscSectionGetNumFields(s, &numFields));
2291: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), subs));
2292: if (numFields) PetscCall(PetscSectionSetNumFields(*subs, numFields));
2293: for (f = 0; f < numFields; ++f) {
2294: const char *name = NULL;
2295: PetscInt numComp = 0;
2297: PetscCall(PetscSectionGetFieldName(s, f, &name));
2298: PetscCall(PetscSectionSetFieldName(*subs, f, name));
2299: PetscCall(PetscSectionGetFieldComponents(s, f, &numComp));
2300: PetscCall(PetscSectionSetFieldComponents(*subs, f, numComp));
2301: for (c = 0; c < s->numFieldComponents[f]; ++c) {
2302: PetscCall(PetscSectionGetComponentName(s, f, c, &name));
2303: PetscCall(PetscSectionSetComponentName(*subs, f, c, name));
2304: }
2305: }
2306: /* For right now, we do not try to squeeze the subchart */
2307: if (subpointIS) {
2308: PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
2309: PetscCall(ISGetIndices(subpointIS, &points));
2310: }
2311: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2312: if (renumberPoints) {
2313: PetscBool sorted;
2315: spStart = 0;
2316: spEnd = numSubpoints;
2317: PetscCall(ISSorted(subpointIS, &sorted));
2318: if (!sorted) {
2319: PetscCall(PetscMalloc2(numSubpoints, &spoints, numSubpoints, &order));
2320: PetscCall(PetscArraycpy(spoints, points, numSubpoints));
2321: for (PetscInt i = 0; i < numSubpoints; ++i) order[i] = i;
2322: PetscCall(PetscSortIntWithArray(numSubpoints, spoints, order));
2323: }
2324: } else {
2325: PetscCall(ISGetMinMax(subpointIS, &spStart, &spEnd));
2326: ++spEnd;
2327: }
2328: PetscCall(PetscSectionSetChart(*subs, spStart, spEnd));
2329: for (p = pStart; p < pEnd; ++p) {
2330: PetscInt dof, cdof, fdof = 0, cfdof = 0;
2332: PetscCall(PetscFindInt(p, numSubpoints, spoints ? spoints : points, &subp));
2333: if (subp < 0) continue;
2334: if (!renumberPoints) subp = p;
2335: else subp = order ? order[subp] : subp;
2336: for (f = 0; f < numFields; ++f) {
2337: PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof));
2338: PetscCall(PetscSectionSetFieldDof(*subs, subp, f, fdof));
2339: PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cfdof));
2340: if (cfdof) PetscCall(PetscSectionSetFieldConstraintDof(*subs, subp, f, cfdof));
2341: }
2342: PetscCall(PetscSectionGetDof(s, p, &dof));
2343: PetscCall(PetscSectionSetDof(*subs, subp, dof));
2344: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
2345: if (cdof) PetscCall(PetscSectionSetConstraintDof(*subs, subp, cdof));
2346: }
2347: PetscCall(PetscSectionSetUp(*subs));
2348: /* Change offsets to original offsets */
2349: for (p = pStart; p < pEnd; ++p) {
2350: PetscInt off, foff = 0;
2352: PetscCall(PetscFindInt(p, numSubpoints, spoints ? spoints : points, &subp));
2353: if (subp < 0) continue;
2354: if (!renumberPoints) subp = p;
2355: else subp = order ? order[subp] : subp;
2356: for (f = 0; f < numFields; ++f) {
2357: PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff));
2358: PetscCall(PetscSectionSetFieldOffset(*subs, subp, f, foff));
2359: }
2360: PetscCall(PetscSectionGetOffset(s, p, &off));
2361: PetscCall(PetscSectionSetOffset(*subs, subp, off));
2362: }
2363: /* Copy constraint indices */
2364: for (subp = spStart; subp < spEnd; ++subp) {
2365: PetscInt cdof;
2367: PetscCall(PetscSectionGetConstraintDof(*subs, subp, &cdof));
2368: if (cdof) {
2369: for (f = 0; f < numFields; ++f) {
2370: PetscCall(PetscSectionGetFieldConstraintIndices(s, points[subp - spStart], f, &indices));
2371: PetscCall(PetscSectionSetFieldConstraintIndices(*subs, subp, f, indices));
2372: }
2373: PetscCall(PetscSectionGetConstraintIndices(s, points[subp - spStart], &indices));
2374: PetscCall(PetscSectionSetConstraintIndices(*subs, subp, indices));
2375: }
2376: }
2377: if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &points));
2378: PetscCall(PetscFree2(spoints, order));
2379: PetscFunctionReturn(PETSC_SUCCESS);
2380: }
2382: /*@
2383: PetscSectionCreateSubmeshSection - Create a new, smaller section with support on the submesh
2385: Collective
2387: Input Parameters:
2388: + s - the `PetscSection`
2389: - subpointIS - a sorted list of points in the original mesh which are in the submesh
2391: Output Parameter:
2392: . subs - the subsection
2394: Level: advanced
2396: Notes:
2397: The points are renumbered from 0, and the section offsets now refer to a new, smaller vector. That is the chart of `subs` is `[0,sizeof(subpointmap))`
2399: Compare this with `PetscSectionCreateSubdomainSection()` that does not map the points numbers to start at zero but leaves them as before
2401: Developer Notes:
2402: The use of the term Submesh is confusing and needs clarification, it is not specific to meshes. It appears to be just a subset of the chart of the original `PetscSection`
2404: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubdomainSection()`, `PetscSectionCreateSubsection()`, `DMPlexGetSubpointMap()`, `PetscSectionCreate()`
2405: @*/
2406: PetscErrorCode PetscSectionCreateSubmeshSection(PetscSection s, IS subpointIS, PetscSection *subs)
2407: {
2408: PetscFunctionBegin;
2409: PetscCall(PetscSectionCreateSubplexSection_Private(s, subpointIS, PETSC_TRUE, subs));
2410: PetscFunctionReturn(PETSC_SUCCESS);
2411: }
2413: /*@
2414: PetscSectionCreateSubdomainSection - Create a new, smaller section with support on a subdomain of the mesh
2416: Collective
2418: Input Parameters:
2419: + s - the `PetscSection`
2420: - subpointMap - a sorted list of points in the original mesh which are in the subdomain
2422: Output Parameter:
2423: . subs - the subsection
2425: Level: advanced
2427: Notes:
2428: The point numbers remain the same as in the larger `PetscSection`, but the section offsets now refer to a new, smaller vector. The chart of `subs`
2429: is `[min(subpointMap),max(subpointMap)+1)`
2431: Compare this with `PetscSectionCreateSubmeshSection()` that maps the point numbers to start at zero
2433: Developer Notes:
2434: The use of the term Subdomain is unneeded and needs clarification, it is not specific to meshes. It appears to be just a subset of the chart of the original `PetscSection`
2436: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubmeshSection()`, `PetscSectionCreateSubsection()`, `DMPlexGetSubpointMap()`, `PetscSectionCreate()`
2437: @*/
2438: PetscErrorCode PetscSectionCreateSubdomainSection(PetscSection s, IS subpointMap, PetscSection *subs)
2439: {
2440: PetscFunctionBegin;
2441: PetscCall(PetscSectionCreateSubplexSection_Private(s, subpointMap, PETSC_FALSE, subs));
2442: PetscFunctionReturn(PETSC_SUCCESS);
2443: }
2445: static PetscErrorCode PetscSectionView_ASCII(PetscSection s, PetscViewer viewer)
2446: {
2447: PetscInt p;
2448: PetscMPIInt rank;
2450: PetscFunctionBegin;
2451: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank));
2452: PetscCall(PetscViewerASCIIPushSynchronized(viewer));
2453: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Process %d:\n", rank));
2454: for (p = 0; p < s->pEnd - s->pStart; ++p) {
2455: if (s->bc && s->bc->atlasDof[p] > 0) {
2456: PetscInt b;
2457: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dof %2" PetscInt_FMT " offset %3" PetscInt_FMT " constrained", p + s->pStart, s->atlasDof[p], s->atlasOff[p]));
2458: if (s->bcIndices) {
2459: for (b = 0; b < s->bc->atlasDof[p]; ++b) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %" PetscInt_FMT, s->bcIndices[s->bc->atlasOff[p] + b]));
2460: }
2461: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\n"));
2462: } else {
2463: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dof %2" PetscInt_FMT " offset %3" PetscInt_FMT "\n", p + s->pStart, s->atlasDof[p], s->atlasOff[p]));
2464: }
2465: }
2466: PetscCall(PetscViewerFlush(viewer));
2467: PetscCall(PetscViewerASCIIPopSynchronized(viewer));
2468: if (s->sym) {
2469: PetscCall(PetscViewerASCIIPushTab(viewer));
2470: PetscCall(PetscSectionSymView(s->sym, viewer));
2471: PetscCall(PetscViewerASCIIPopTab(viewer));
2472: }
2473: PetscFunctionReturn(PETSC_SUCCESS);
2474: }
2476: /*@
2477: PetscSectionViewFromOptions - View the `PetscSection` based on values in the options database
2479: Collective
2481: Input Parameters:
2482: + A - the `PetscSection` object to view
2483: . obj - Optional object that provides the options prefix used for the options
2484: - name - command line option
2486: Level: intermediate
2488: Note:
2489: See `PetscObjectViewFromOptions()` for available values of `PetscViewer` and `PetscViewerFormat`
2491: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionView`, `PetscObjectViewFromOptions()`, `PetscSectionCreate()`, `PetscSectionView()`
2492: @*/
2493: PetscErrorCode PetscSectionViewFromOptions(PetscSection A, PetscObject obj, const char name[])
2494: {
2495: PetscFunctionBegin;
2497: PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name));
2498: PetscFunctionReturn(PETSC_SUCCESS);
2499: }
2501: /*@
2502: PetscSectionView - Views a `PetscSection`
2504: Collective
2506: Input Parameters:
2507: + s - the `PetscSection` object to view
2508: - viewer - the viewer
2510: Level: beginner
2512: Note:
2513: `PetscSectionView()`, when viewer is of type `PETSCVIEWERHDF5`, only saves
2514: distribution independent data, such as dofs, offsets, constraint dofs,
2515: and constraint indices. Points that have negative dofs, for instance,
2516: are not saved as they represent points owned by other processes.
2517: Point numbering and rank assignment is currently not stored.
2518: The saved section can be loaded with `PetscSectionLoad()`.
2520: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionLoad()`, `PetscViewer`
2521: @*/
2522: PetscErrorCode PetscSectionView(PetscSection s, PetscViewer viewer)
2523: {
2524: PetscBool isascii, ishdf5;
2525: PetscInt f;
2527: PetscFunctionBegin;
2529: if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)s), &viewer));
2531: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
2532: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
2533: if (isascii) {
2534: PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)s, viewer));
2535: if (s->numFields) {
2536: PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " fields\n", s->numFields));
2537: for (f = 0; f < s->numFields; ++f) {
2538: PetscCall(PetscViewerASCIIPrintf(viewer, " field %" PetscInt_FMT " \"%s\" with %" PetscInt_FMT " components\n", f, s->fieldNames[f], s->numFieldComponents[f]));
2539: PetscCall(PetscSectionView_ASCII(s->field[f], viewer));
2540: }
2541: } else {
2542: PetscCall(PetscSectionView_ASCII(s, viewer));
2543: }
2544: } else if (ishdf5) {
2545: #if PetscDefined(HAVE_HDF5)
2546: PetscCall(PetscSectionView_HDF5_Internal(s, viewer));
2547: #else
2548: SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
2549: #endif
2550: }
2551: PetscFunctionReturn(PETSC_SUCCESS);
2552: }
2554: /*@
2555: PetscSectionLoad - Loads a `PetscSection`
2557: Collective
2559: Input Parameters:
2560: + s - the `PetscSection` object to load
2561: - viewer - the viewer
2563: Level: beginner
2565: Note:
2566: `PetscSectionLoad()`, when viewer is of type `PETSCVIEWERHDF5`, loads
2567: a section saved with `PetscSectionView()`. The number of processes
2568: used here (N) does not need to be the same as that used when saving.
2569: After calling this function, the chart of s on rank i will be set
2570: to [0, E_i), where \sum_{i=0}^{N-1}E_i equals to the total number of
2571: saved section points.
2573: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionView()`
2574: @*/
2575: PetscErrorCode PetscSectionLoad(PetscSection s, PetscViewer viewer)
2576: {
2577: PetscBool ishdf5;
2579: PetscFunctionBegin;
2582: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
2583: if (ishdf5) {
2584: #if PetscDefined(HAVE_HDF5)
2585: PetscCall(PetscSectionLoad_HDF5_Internal(s, viewer));
2586: PetscFunctionReturn(PETSC_SUCCESS);
2587: #else
2588: SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
2589: #endif
2590: } else SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "Viewer type %s not yet supported for PetscSection loading", ((PetscObject)viewer)->type_name);
2591: }
2593: /*@
2594: PetscSectionResetClosurePermutation - Remove any existing closure permutation
2596: Input Parameter:
2597: . section - The `PetscSection`
2599: Level: intermediate
2601: .seealso: `PetscSectionSetClosurePermutation()`, `PetscSectionSetClosureIndex()`, `PetscSectionReset()`
2602: @*/
2603: PetscErrorCode PetscSectionResetClosurePermutation(PetscSection section)
2604: {
2605: PetscSectionClosurePermVal clVal;
2607: PetscFunctionBegin;
2608: if (!section->clHash) PetscFunctionReturn(PETSC_SUCCESS);
2609: kh_foreach_value(section->clHash, clVal, {
2610: PetscCall(PetscFree(clVal.perm));
2611: PetscCall(PetscFree(clVal.invPerm));
2612: });
2613: kh_destroy(ClPerm, section->clHash);
2614: section->clHash = NULL;
2615: PetscFunctionReturn(PETSC_SUCCESS);
2616: }
2618: /*@
2619: PetscSectionReset - Frees all section data, the section is then as if `PetscSectionCreate()` had just been called.
2621: Not Collective
2623: Input Parameter:
2624: . s - the `PetscSection`
2626: Level: beginner
2628: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`
2629: @*/
2630: PetscErrorCode PetscSectionReset(PetscSection s)
2631: {
2632: PetscInt f, c;
2634: PetscFunctionBegin;
2636: for (f = 0; f < s->numFields; ++f) {
2637: PetscCall(PetscSectionDestroy(&s->field[f]));
2638: PetscCall(PetscFree(s->fieldNames[f]));
2639: for (c = 0; c < s->numFieldComponents[f]; ++c) PetscCall(PetscFree(s->compNames[f][c]));
2640: PetscCall(PetscFree(s->compNames[f]));
2641: }
2642: PetscCall(PetscFree(s->numFieldComponents));
2643: PetscCall(PetscFree(s->fieldNames));
2644: PetscCall(PetscFree(s->compNames));
2645: PetscCall(PetscFree(s->field));
2646: PetscCall(PetscSectionDestroy(&s->bc));
2647: PetscCall(PetscFree(s->bcIndices));
2648: PetscCall(PetscFree2(s->atlasDof, s->atlasOff));
2649: PetscCall(PetscSectionDestroy(&s->clSection));
2650: PetscCall(ISDestroy(&s->clPoints));
2651: PetscCall(ISDestroy(&s->perm));
2652: PetscCall(PetscBTDestroy(&s->blockStarts));
2653: PetscCall(PetscSectionResetClosurePermutation(s));
2654: PetscCall(PetscSectionSymDestroy(&s->sym));
2655: PetscCall(PetscSectionDestroy(&s->clSection));
2656: PetscCall(ISDestroy(&s->clPoints));
2657: PetscCall(PetscSectionInvalidateMaxDof_Internal(s));
2658: s->pStart = -1;
2659: s->pEnd = -1;
2660: s->maxDof = 0;
2661: s->setup = PETSC_FALSE;
2662: s->numFields = 0;
2663: s->clObj = NULL;
2664: PetscFunctionReturn(PETSC_SUCCESS);
2665: }
2667: /*@
2668: PetscSectionDestroy - Frees a `PetscSection`
2670: Not Collective
2672: Input Parameter:
2673: . s - the `PetscSection`
2675: Level: beginner
2677: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionReset()`
2678: @*/
2679: PetscErrorCode PetscSectionDestroy(PetscSection *s)
2680: {
2681: PetscFunctionBegin;
2682: if (!*s) PetscFunctionReturn(PETSC_SUCCESS);
2684: if (--((PetscObject)*s)->refct > 0) {
2685: *s = NULL;
2686: PetscFunctionReturn(PETSC_SUCCESS);
2687: }
2688: PetscCall(PetscSectionReset(*s));
2689: PetscCall(PetscHeaderDestroy(s));
2690: PetscFunctionReturn(PETSC_SUCCESS);
2691: }
2693: static PetscErrorCode VecIntGetValuesSection_Private(const PetscInt *baseArray, PetscSection s, PetscInt point, const PetscInt **values)
2694: {
2695: const PetscInt p = point - s->pStart;
2697: PetscFunctionBegin;
2699: *values = &baseArray[s->atlasOff[p]];
2700: PetscFunctionReturn(PETSC_SUCCESS);
2701: }
2703: static PetscErrorCode VecIntSetValuesSection_Private(PetscInt *baseArray, PetscSection s, PetscInt point, const PetscInt values[], InsertMode mode)
2704: {
2705: PetscInt *array;
2706: const PetscInt p = point - s->pStart;
2707: const PetscInt orientation = 0; /* Needs to be included for use in closure operations */
2708: PetscInt cDim = 0;
2710: PetscFunctionBegin;
2712: PetscCall(PetscSectionGetConstraintDof(s, p, &cDim));
2713: array = &baseArray[s->atlasOff[p]];
2714: if (!cDim) {
2715: if (orientation >= 0) {
2716: const PetscInt dim = s->atlasDof[p];
2717: PetscInt i;
2719: if (mode == INSERT_VALUES) {
2720: for (i = 0; i < dim; ++i) array[i] = values ? values[i] : i;
2721: } else {
2722: for (i = 0; i < dim; ++i) array[i] += values[i];
2723: }
2724: } else {
2725: PetscInt offset = 0;
2726: PetscInt j = -1, field, i;
2728: for (field = 0; field < s->numFields; ++field) {
2729: const PetscInt dim = s->field[field]->atlasDof[p];
2731: for (i = dim - 1; i >= 0; --i) array[++j] = values ? values[i + offset] : i + offset;
2732: offset += dim;
2733: }
2734: }
2735: } else {
2736: if (orientation >= 0) {
2737: const PetscInt dim = s->atlasDof[p];
2738: PetscInt cInd = 0, i;
2739: const PetscInt *cDof;
2741: PetscCall(PetscSectionGetConstraintIndices(s, point, &cDof));
2742: if (mode == INSERT_VALUES) {
2743: for (i = 0; i < dim; ++i) {
2744: if ((cInd < cDim) && (i == cDof[cInd])) {
2745: ++cInd;
2746: continue;
2747: }
2748: array[i] = values ? values[i] : i;
2749: }
2750: } else {
2751: for (i = 0; i < dim; ++i) {
2752: if ((cInd < cDim) && (i == cDof[cInd])) {
2753: ++cInd;
2754: continue;
2755: }
2756: array[i] += values[i];
2757: }
2758: }
2759: } else {
2760: const PetscInt *cDof;
2761: PetscInt offset = 0;
2762: PetscInt cOffset = 0;
2763: PetscInt j = 0, field;
2765: PetscCall(PetscSectionGetConstraintIndices(s, point, &cDof));
2766: for (field = 0; field < s->numFields; ++field) {
2767: const PetscInt dim = s->field[field]->atlasDof[p]; /* PetscSectionGetFieldDof() */
2768: const PetscInt tDim = s->field[field]->bc->atlasDof[p]; /* PetscSectionGetFieldConstraintDof() */
2769: const PetscInt sDim = dim - tDim;
2770: PetscInt cInd = 0, i, k;
2772: for (i = 0, k = dim + offset - 1; i < dim; ++i, ++j, --k) {
2773: if ((cInd < sDim) && (j == cDof[cInd + cOffset])) {
2774: ++cInd;
2775: continue;
2776: }
2777: array[j] = values ? values[k] : k;
2778: }
2779: offset += dim;
2780: cOffset += dim - tDim;
2781: }
2782: }
2783: }
2784: PetscFunctionReturn(PETSC_SUCCESS);
2785: }
2787: /*@
2788: PetscSectionHasConstraints - Determine whether a `PetscSection` has constrained dofs
2790: Not Collective
2792: Input Parameter:
2793: . s - The `PetscSection`
2795: Output Parameter:
2796: . hasConstraints - flag indicating that the section has constrained dofs
2798: Level: intermediate
2800: .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection`
2801: @*/
2802: PetscErrorCode PetscSectionHasConstraints(PetscSection s, PetscBool *hasConstraints)
2803: {
2804: PetscFunctionBegin;
2806: PetscAssertPointer(hasConstraints, 2);
2807: *hasConstraints = s->bc ? PETSC_TRUE : PETSC_FALSE;
2808: PetscFunctionReturn(PETSC_SUCCESS);
2809: }
2811: /*@C
2812: PetscSectionGetConstraintIndices - Get the point dof numbers, in [0, dof), which are constrained for a given point
2814: Not Collective
2816: Input Parameters:
2817: + s - The `PetscSection`
2818: - point - The point
2820: Output Parameter:
2821: . indices - The constrained dofs
2823: Level: intermediate
2825: Fortran Notes:
2826: Use `PetscSectionGetConstraintIndicesF90()` and `PetscSectionRestoreConstraintIndicesF90()`
2828: .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection`
2829: @*/
2830: PetscErrorCode PetscSectionGetConstraintIndices(PetscSection s, PetscInt point, const PetscInt *indices[])
2831: {
2832: PetscFunctionBegin;
2834: if (s->bc) {
2835: PetscCall(VecIntGetValuesSection_Private(s->bcIndices, s->bc, point, indices));
2836: } else *indices = NULL;
2837: PetscFunctionReturn(PETSC_SUCCESS);
2838: }
2840: /*@
2841: PetscSectionSetConstraintIndices - Set the point dof numbers, in [0, dof), which are constrained
2843: Not Collective
2845: Input Parameters:
2846: + s - The `PetscSection`
2847: . point - The point
2848: - indices - The constrained dofs
2850: Level: intermediate
2852: Fortran Notes:
2853: Use `PetscSectionSetConstraintIndicesF90()`
2855: .seealso: [PetscSection](sec_petscsection), `PetscSectionGetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection`
2856: @*/
2857: PetscErrorCode PetscSectionSetConstraintIndices(PetscSection s, PetscInt point, const PetscInt indices[])
2858: {
2859: PetscFunctionBegin;
2861: if (s->bc) {
2862: const PetscInt dof = s->atlasDof[point];
2863: const PetscInt cdof = s->bc->atlasDof[point];
2864: PetscInt d;
2866: if (indices)
2867: for (d = 0; d < cdof; ++d) PetscCheck(indices[d] < dof, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " dof %" PetscInt_FMT ", invalid constraint index[%" PetscInt_FMT "]: %" PetscInt_FMT, point, dof, d, indices[d]);
2868: PetscCall(VecIntSetValuesSection_Private(s->bcIndices, s->bc, point, indices, INSERT_VALUES));
2869: }
2870: PetscFunctionReturn(PETSC_SUCCESS);
2871: }
2873: /*@C
2874: PetscSectionGetFieldConstraintIndices - Get the field dof numbers, in [0, fdof), which are constrained
2876: Not Collective
2878: Input Parameters:
2879: + s - The `PetscSection`
2880: . field - The field number
2881: - point - The point
2883: Output Parameter:
2884: . indices - The constrained dofs sorted in ascending order
2886: Level: intermediate
2888: Note:
2889: The indices array, which is provided by the caller, must have capacity to hold the number of constrained dofs, e.g., as returned by `PetscSectionGetConstraintDof()`.
2891: Fortran Notes:
2892: Use `PetscSectionGetFieldConstraintIndicesF90()` and `PetscSectionRestoreFieldConstraintIndicesF90()`
2894: .seealso: [PetscSection](sec_petscsection), `PetscSectionSetFieldConstraintIndices()`, `PetscSectionGetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection`
2895: @*/
2896: PetscErrorCode PetscSectionGetFieldConstraintIndices(PetscSection s, PetscInt point, PetscInt field, const PetscInt **indices)
2897: {
2898: PetscFunctionBegin;
2900: PetscAssertPointer(indices, 4);
2901: PetscSectionCheckValidField(field, s->numFields);
2902: PetscCall(PetscSectionGetConstraintIndices(s->field[field], point, indices));
2903: PetscFunctionReturn(PETSC_SUCCESS);
2904: }
2906: /*@C
2907: PetscSectionSetFieldConstraintIndices - Set the field dof numbers, in [0, fdof), which are constrained
2909: Not Collective
2911: Input Parameters:
2912: + s - The `PetscSection`
2913: . point - The point
2914: . field - The field number
2915: - indices - The constrained dofs
2917: Level: intermediate
2919: Fortran Notes:
2920: Use `PetscSectionSetFieldConstraintIndicesF90()`
2922: .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetFieldConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection`
2923: @*/
2924: PetscErrorCode PetscSectionSetFieldConstraintIndices(PetscSection s, PetscInt point, PetscInt field, const PetscInt indices[])
2925: {
2926: PetscFunctionBegin;
2928: PetscSectionCheckValidField(field, s->numFields);
2929: PetscCall(PetscSectionSetConstraintIndices(s->field[field], point, indices));
2930: PetscFunctionReturn(PETSC_SUCCESS);
2931: }
2933: /*@
2934: PetscSectionPermute - Reorder the section according to the input point permutation
2936: Collective
2938: Input Parameters:
2939: + section - The `PetscSection` object
2940: - permutation - The point permutation, old point p becomes new point perm[p]
2942: Output Parameter:
2943: . sectionNew - The permuted `PetscSection`
2945: Level: intermediate
2947: Note:
2948: The data and the access to the data via `PetscSectionGetFieldOffset()` and `PetscSectionGetOffset()` are both changed in `sectionNew`
2950: Compare to `PetscSectionSetPermutation()`
2952: .seealso: [PetscSection](sec_petscsection), `IS`, `PetscSection`, `MatPermute()`, `PetscSectionSetPermutation()`
2953: @*/
2954: PetscErrorCode PetscSectionPermute(PetscSection section, IS permutation, PetscSection *sectionNew)
2955: {
2956: PetscSection s = section, sNew;
2957: const PetscInt *perm;
2958: PetscInt numFields, f, c, numPoints, pStart, pEnd, p;
2960: PetscFunctionBegin;
2963: PetscAssertPointer(sectionNew, 3);
2964: PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &sNew));
2965: PetscCall(PetscSectionGetNumFields(s, &numFields));
2966: if (numFields) PetscCall(PetscSectionSetNumFields(sNew, numFields));
2967: for (f = 0; f < numFields; ++f) {
2968: const char *name;
2969: PetscInt numComp;
2971: PetscCall(PetscSectionGetFieldName(s, f, &name));
2972: PetscCall(PetscSectionSetFieldName(sNew, f, name));
2973: PetscCall(PetscSectionGetFieldComponents(s, f, &numComp));
2974: PetscCall(PetscSectionSetFieldComponents(sNew, f, numComp));
2975: for (c = 0; c < s->numFieldComponents[f]; ++c) {
2976: PetscCall(PetscSectionGetComponentName(s, f, c, &name));
2977: PetscCall(PetscSectionSetComponentName(sNew, f, c, name));
2978: }
2979: }
2980: PetscCall(ISGetLocalSize(permutation, &numPoints));
2981: PetscCall(ISGetIndices(permutation, &perm));
2982: PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2983: PetscCall(PetscSectionSetChart(sNew, pStart, pEnd));
2984: PetscCheck(numPoints >= pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Permutation size %" PetscInt_FMT " is less than largest Section point %" PetscInt_FMT, numPoints, pEnd);
2985: for (p = pStart; p < pEnd; ++p) {
2986: PetscInt dof, cdof;
2988: PetscCall(PetscSectionGetDof(s, p, &dof));
2989: PetscCall(PetscSectionSetDof(sNew, perm[p], dof));
2990: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
2991: if (cdof) PetscCall(PetscSectionSetConstraintDof(sNew, perm[p], cdof));
2992: for (f = 0; f < numFields; ++f) {
2993: PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2994: PetscCall(PetscSectionSetFieldDof(sNew, perm[p], f, dof));
2995: PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof));
2996: if (cdof) PetscCall(PetscSectionSetFieldConstraintDof(sNew, perm[p], f, cdof));
2997: }
2998: }
2999: PetscCall(PetscSectionSetUp(sNew));
3000: for (p = pStart; p < pEnd; ++p) {
3001: const PetscInt *cind;
3002: PetscInt cdof;
3004: PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
3005: if (cdof) {
3006: PetscCall(PetscSectionGetConstraintIndices(s, p, &cind));
3007: PetscCall(PetscSectionSetConstraintIndices(sNew, perm[p], cind));
3008: }
3009: for (f = 0; f < numFields; ++f) {
3010: PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof));
3011: if (cdof) {
3012: PetscCall(PetscSectionGetFieldConstraintIndices(s, p, f, &cind));
3013: PetscCall(PetscSectionSetFieldConstraintIndices(sNew, perm[p], f, cind));
3014: }
3015: }
3016: }
3017: PetscCall(ISRestoreIndices(permutation, &perm));
3018: *sectionNew = sNew;
3019: PetscFunctionReturn(PETSC_SUCCESS);
3020: }
3022: /*@
3023: PetscSectionSetClosureIndex - Create an internal data structure to speed up closure queries.
3025: Collective
3027: Input Parameters:
3028: + section - The `PetscSection`
3029: . obj - A `PetscObject` which serves as the key for this index
3030: . clSection - `PetscSection` giving the size of the closure of each point
3031: - clPoints - `IS` giving the points in each closure
3033: Level: advanced
3035: Note:
3036: This function creates an internal map from each point to its closure. We compress out closure points with no dofs in this section.
3038: Developer Notes:
3039: The information provided here is completely opaque
3041: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetClosureIndex()`, `DMPlexCreateClosureIndex()`
3042: @*/
3043: PetscErrorCode PetscSectionSetClosureIndex(PetscSection section, PetscObject obj, PetscSection clSection, IS clPoints)
3044: {
3045: PetscFunctionBegin;
3049: if (section->clObj != obj) PetscCall(PetscSectionResetClosurePermutation(section));
3050: section->clObj = obj;
3051: PetscCall(PetscObjectReference((PetscObject)clSection));
3052: PetscCall(PetscObjectReference((PetscObject)clPoints));
3053: PetscCall(PetscSectionDestroy(§ion->clSection));
3054: PetscCall(ISDestroy(§ion->clPoints));
3055: section->clSection = clSection;
3056: section->clPoints = clPoints;
3057: PetscFunctionReturn(PETSC_SUCCESS);
3058: }
3060: /*@
3061: PetscSectionGetClosureIndex - Get the cache of points in the closure of each point in the section set with `PetscSectionSetClosureIndex()`
3063: Collective
3065: Input Parameters:
3066: + section - The `PetscSection`
3067: - obj - A `PetscObject` which serves as the key for this index
3069: Output Parameters:
3070: + clSection - `PetscSection` giving the size of the closure of each point
3071: - clPoints - `IS` giving the points in each closure
3073: Level: advanced
3075: .seealso: [PetscSection](sec_petscsection), `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()`
3076: @*/
3077: PetscErrorCode PetscSectionGetClosureIndex(PetscSection section, PetscObject obj, PetscSection *clSection, IS *clPoints)
3078: {
3079: PetscFunctionBegin;
3080: if (section->clObj == obj) {
3081: if (clSection) *clSection = section->clSection;
3082: if (clPoints) *clPoints = section->clPoints;
3083: } else {
3084: if (clSection) *clSection = NULL;
3085: if (clPoints) *clPoints = NULL;
3086: }
3087: PetscFunctionReturn(PETSC_SUCCESS);
3088: }
3090: PetscErrorCode PetscSectionSetClosurePermutation_Internal(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, PetscCopyMode mode, PetscInt *clPerm)
3091: {
3092: PetscInt i;
3093: khiter_t iter;
3094: int new_entry;
3095: PetscSectionClosurePermKey key = {depth, clSize};
3096: PetscSectionClosurePermVal *val;
3098: PetscFunctionBegin;
3099: if (section->clObj != obj) {
3100: PetscCall(PetscSectionDestroy(§ion->clSection));
3101: PetscCall(ISDestroy(§ion->clPoints));
3102: }
3103: section->clObj = obj;
3104: if (!section->clHash) PetscCall(PetscClPermCreate(§ion->clHash));
3105: iter = kh_put(ClPerm, section->clHash, key, &new_entry);
3106: val = &kh_val(section->clHash, iter);
3107: if (!new_entry) {
3108: PetscCall(PetscFree(val->perm));
3109: PetscCall(PetscFree(val->invPerm));
3110: }
3111: if (mode == PETSC_COPY_VALUES) {
3112: PetscCall(PetscMalloc1(clSize, &val->perm));
3113: PetscCall(PetscArraycpy(val->perm, clPerm, clSize));
3114: } else if (mode == PETSC_OWN_POINTER) {
3115: val->perm = clPerm;
3116: } else SETERRQ(PetscObjectComm(obj), PETSC_ERR_SUP, "Do not support borrowed arrays");
3117: PetscCall(PetscMalloc1(clSize, &val->invPerm));
3118: for (i = 0; i < clSize; ++i) val->invPerm[clPerm[i]] = i;
3119: PetscFunctionReturn(PETSC_SUCCESS);
3120: }
3122: /*@
3123: PetscSectionSetClosurePermutation - Set the dof permutation for the closure of each cell in the section, meaning clPerm[newIndex] = oldIndex.
3125: Not Collective
3127: Input Parameters:
3128: + section - The `PetscSection`
3129: . obj - A `PetscObject` which serves as the key for this index (usually a `DM`)
3130: . depth - Depth of points on which to apply the given permutation
3131: - perm - Permutation of the cell dof closure
3133: Level: intermediate
3135: Notes:
3136: The specified permutation will only be applied to points at depth whose closure size matches the length of perm. In a
3137: mixed-topology or variable-degree finite element space, this function can be called multiple times at each depth for
3138: each topology and degree.
3140: This approach assumes that (depth, len(perm)) uniquely identifies the desired permutation; this might not be true for
3141: exotic/enriched spaces on mixed topology meshes.
3143: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionGetClosurePermutation()`, `PetscSectionGetClosureIndex()`, `DMPlexCreateClosureIndex()`, `PetscCopyMode`
3144: @*/
3145: PetscErrorCode PetscSectionSetClosurePermutation(PetscSection section, PetscObject obj, PetscInt depth, IS perm)
3146: {
3147: const PetscInt *clPerm = NULL;
3148: PetscInt clSize = 0;
3150: PetscFunctionBegin;
3151: if (perm) {
3152: PetscCall(ISGetLocalSize(perm, &clSize));
3153: PetscCall(ISGetIndices(perm, &clPerm));
3154: }
3155: PetscCall(PetscSectionSetClosurePermutation_Internal(section, obj, depth, clSize, PETSC_COPY_VALUES, (PetscInt *)clPerm));
3156: if (perm) PetscCall(ISRestoreIndices(perm, &clPerm));
3157: PetscFunctionReturn(PETSC_SUCCESS);
3158: }
3160: static PetscErrorCode PetscSectionGetClosurePermutation_Private(PetscSection section, PetscObject obj, PetscInt depth, PetscInt size, const PetscInt *perm[])
3161: {
3162: PetscFunctionBegin;
3163: if (section->clObj == obj) {
3164: PetscSectionClosurePermKey k = {depth, size};
3165: PetscSectionClosurePermVal v;
3167: PetscCall(PetscClPermGet(section->clHash, k, &v));
3168: if (perm) *perm = v.perm;
3169: } else {
3170: if (perm) *perm = NULL;
3171: }
3172: PetscFunctionReturn(PETSC_SUCCESS);
3173: }
3175: /*@
3176: PetscSectionGetClosurePermutation - Get the dof permutation for the closure of each cell in the section, meaning clPerm[newIndex] = oldIndex.
3178: Not Collective
3180: Input Parameters:
3181: + section - The `PetscSection`
3182: . obj - A `PetscObject` which serves as the key for this index (usually a DM)
3183: . depth - Depth stratum on which to obtain closure permutation
3184: - clSize - Closure size to be permuted (e.g., may vary with element topology and degree)
3186: Output Parameter:
3187: . perm - The dof closure permutation
3189: Level: intermediate
3191: Note:
3192: The user must destroy the `IS` that is returned.
3194: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetClosurePermutation()`, `PetscSectionGetClosureInversePermutation()`, `PetscSectionGetClosureIndex()`, `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()`
3195: @*/
3196: PetscErrorCode PetscSectionGetClosurePermutation(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, IS *perm)
3197: {
3198: const PetscInt *clPerm = NULL;
3200: PetscFunctionBegin;
3201: PetscCall(PetscSectionGetClosurePermutation_Private(section, obj, depth, clSize, &clPerm));
3202: PetscCheck(clPerm, PetscObjectComm(obj), PETSC_ERR_ARG_WRONG, "There is no closure permutation associated with this object for depth %" PetscInt_FMT " of size %" PetscInt_FMT, depth, clSize);
3203: PetscCall(ISCreateGeneral(PETSC_COMM_SELF, clSize, clPerm, PETSC_USE_POINTER, perm));
3204: PetscFunctionReturn(PETSC_SUCCESS);
3205: }
3207: PetscErrorCode PetscSectionGetClosureInversePermutation_Internal(PetscSection section, PetscObject obj, PetscInt depth, PetscInt size, const PetscInt *perm[])
3208: {
3209: PetscFunctionBegin;
3210: if (section->clObj == obj && section->clHash) {
3211: PetscSectionClosurePermKey k = {depth, size};
3212: PetscSectionClosurePermVal v;
3213: PetscCall(PetscClPermGet(section->clHash, k, &v));
3214: if (perm) *perm = v.invPerm;
3215: } else {
3216: if (perm) *perm = NULL;
3217: }
3218: PetscFunctionReturn(PETSC_SUCCESS);
3219: }
3221: /*@
3222: PetscSectionGetClosureInversePermutation - Get the inverse dof permutation for the closure of each cell in the section, meaning clPerm[oldIndex] = newIndex.
3224: Not Collective
3226: Input Parameters:
3227: + section - The `PetscSection`
3228: . obj - A `PetscObject` which serves as the key for this index (usually a `DM`)
3229: . depth - Depth stratum on which to obtain closure permutation
3230: - clSize - Closure size to be permuted (e.g., may vary with element topology and degree)
3232: Output Parameter:
3233: . perm - The dof closure permutation
3235: Level: intermediate
3237: Note:
3238: The user must destroy the `IS` that is returned.
3240: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetClosurePermutation()`, `PetscSectionGetClosureIndex()`, `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()`
3241: @*/
3242: PetscErrorCode PetscSectionGetClosureInversePermutation(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, IS *perm)
3243: {
3244: const PetscInt *clPerm = NULL;
3246: PetscFunctionBegin;
3247: PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, obj, depth, clSize, &clPerm));
3248: PetscCall(ISCreateGeneral(PETSC_COMM_SELF, clSize, clPerm, PETSC_USE_POINTER, perm));
3249: PetscFunctionReturn(PETSC_SUCCESS);
3250: }
3252: /*@
3253: PetscSectionGetField - Get the `PetscSection` associated with a single field
3255: Input Parameters:
3256: + s - The `PetscSection`
3257: - field - The field number
3259: Output Parameter:
3260: . subs - The `PetscSection` for the given field, note the chart of `subs` is not set
3262: Level: intermediate
3264: Note:
3265: Does not increase the reference count of the selected sub-section. There is no matching `PetscSectionRestoreField()`
3267: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetNumFields()`
3268: @*/
3269: PetscErrorCode PetscSectionGetField(PetscSection s, PetscInt field, PetscSection *subs)
3270: {
3271: PetscFunctionBegin;
3273: PetscAssertPointer(subs, 3);
3274: PetscSectionCheckValidField(field, s->numFields);
3275: *subs = s->field[field];
3276: PetscFunctionReturn(PETSC_SUCCESS);
3277: }
3279: PetscClassId PETSC_SECTION_SYM_CLASSID;
3280: PetscFunctionList PetscSectionSymList = NULL;
3282: /*@
3283: PetscSectionSymCreate - Creates an empty `PetscSectionSym` object.
3285: Collective
3287: Input Parameter:
3288: . comm - the MPI communicator
3290: Output Parameter:
3291: . sym - pointer to the new set of symmetries
3293: Level: developer
3295: .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSym`, `PetscSectionSymDestroy()`
3296: @*/
3297: PetscErrorCode PetscSectionSymCreate(MPI_Comm comm, PetscSectionSym *sym)
3298: {
3299: PetscFunctionBegin;
3300: PetscAssertPointer(sym, 2);
3301: PetscCall(ISInitializePackage());
3303: PetscCall(PetscHeaderCreate(*sym, PETSC_SECTION_SYM_CLASSID, "PetscSectionSym", "Section Symmetry", "IS", comm, PetscSectionSymDestroy, PetscSectionSymView));
3304: PetscFunctionReturn(PETSC_SUCCESS);
3305: }
3307: /*@
3308: PetscSectionSymSetType - Builds a `PetscSectionSym`, for a particular implementation.
3310: Collective
3312: Input Parameters:
3313: + sym - The section symmetry object
3314: - method - The name of the section symmetry type
3316: Level: developer
3318: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymGetType()`, `PetscSectionSymCreate()`
3319: @*/
3320: PetscErrorCode PetscSectionSymSetType(PetscSectionSym sym, PetscSectionSymType method)
3321: {
3322: PetscErrorCode (*r)(PetscSectionSym);
3323: PetscBool match;
3325: PetscFunctionBegin;
3327: PetscCall(PetscObjectTypeCompare((PetscObject)sym, method, &match));
3328: if (match) PetscFunctionReturn(PETSC_SUCCESS);
3330: PetscCall(PetscFunctionListFind(PetscSectionSymList, method, &r));
3331: PetscCheck(r, PetscObjectComm((PetscObject)sym), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown PetscSectionSym type: %s", method);
3332: PetscTryTypeMethod(sym, destroy);
3333: sym->ops->destroy = NULL;
3335: PetscCall((*r)(sym));
3336: PetscCall(PetscObjectChangeTypeName((PetscObject)sym, method));
3337: PetscFunctionReturn(PETSC_SUCCESS);
3338: }
3340: /*@
3341: PetscSectionSymGetType - Gets the section symmetry type name (as a string) from the `PetscSectionSym`.
3343: Not Collective
3345: Input Parameter:
3346: . sym - The section symmetry
3348: Output Parameter:
3349: . type - The index set type name
3351: Level: developer
3353: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymSetType()`, `PetscSectionSymCreate()`
3354: @*/
3355: PetscErrorCode PetscSectionSymGetType(PetscSectionSym sym, PetscSectionSymType *type)
3356: {
3357: PetscFunctionBegin;
3359: PetscAssertPointer(type, 2);
3360: *type = ((PetscObject)sym)->type_name;
3361: PetscFunctionReturn(PETSC_SUCCESS);
3362: }
3364: /*@C
3365: PetscSectionSymRegister - Registers a new section symmetry implementation
3367: Not Collective, No Fortran Support
3369: Input Parameters:
3370: + sname - The name of a new user-defined creation routine
3371: - function - The creation routine itself
3373: Level: developer
3375: Notes:
3376: `PetscSectionSymRegister()` may be called multiple times to add several user-defined vectors
3378: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymCreate()`, `PetscSectionSymSetType()`
3379: @*/
3380: PetscErrorCode PetscSectionSymRegister(const char sname[], PetscErrorCode (*function)(PetscSectionSym))
3381: {
3382: PetscFunctionBegin;
3383: PetscCall(ISInitializePackage());
3384: PetscCall(PetscFunctionListAdd(&PetscSectionSymList, sname, function));
3385: PetscFunctionReturn(PETSC_SUCCESS);
3386: }
3388: /*@
3389: PetscSectionSymDestroy - Destroys a section symmetry.
3391: Collective
3393: Input Parameter:
3394: . sym - the section symmetry
3396: Level: developer
3398: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`
3399: @*/
3400: PetscErrorCode PetscSectionSymDestroy(PetscSectionSym *sym)
3401: {
3402: SymWorkLink link, next;
3404: PetscFunctionBegin;
3405: if (!*sym) PetscFunctionReturn(PETSC_SUCCESS);
3407: if (--((PetscObject)*sym)->refct > 0) {
3408: *sym = NULL;
3409: PetscFunctionReturn(PETSC_SUCCESS);
3410: }
3411: PetscTryTypeMethod(*sym, destroy);
3412: PetscCheck(!(*sym)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out");
3413: for (link = (*sym)->workin; link; link = next) {
3414: PetscInt **perms = (PetscInt **)link->perms;
3415: PetscScalar **rots = (PetscScalar **)link->rots;
3416: PetscCall(PetscFree2(perms, rots));
3417: next = link->next;
3418: PetscCall(PetscFree(link));
3419: }
3420: (*sym)->workin = NULL;
3421: PetscCall(PetscHeaderDestroy(sym));
3422: PetscFunctionReturn(PETSC_SUCCESS);
3423: }
3425: /*@
3426: PetscSectionSymView - Displays a section symmetry
3428: Collective
3430: Input Parameters:
3431: + sym - the index set
3432: - viewer - viewer used to display the set, for example `PETSC_VIEWER_STDOUT_SELF`.
3434: Level: developer
3436: .seealso: `PetscSectionSym`, `PetscViewer`, `PetscViewerASCIIOpen()`
3437: @*/
3438: PetscErrorCode PetscSectionSymView(PetscSectionSym sym, PetscViewer viewer)
3439: {
3440: PetscFunctionBegin;
3442: if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sym), &viewer));
3444: PetscCheckSameComm(sym, 1, viewer, 2);
3445: PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sym, viewer));
3446: PetscTryTypeMethod(sym, view, viewer);
3447: PetscFunctionReturn(PETSC_SUCCESS);
3448: }
3450: /*@
3451: PetscSectionSetSym - Set the symmetries for the data referred to by the section
3453: Collective
3455: Input Parameters:
3456: + section - the section describing data layout
3457: - sym - the symmetry describing the affect of orientation on the access of the data
3459: Level: developer
3461: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetSym()`, `PetscSectionSymCreate()`
3462: @*/
3463: PetscErrorCode PetscSectionSetSym(PetscSection section, PetscSectionSym sym)
3464: {
3465: PetscFunctionBegin;
3467: PetscCall(PetscSectionSymDestroy(§ion->sym));
3468: if (sym) {
3470: PetscCheckSameComm(section, 1, sym, 2);
3471: PetscCall(PetscObjectReference((PetscObject)sym));
3472: }
3473: section->sym = sym;
3474: PetscFunctionReturn(PETSC_SUCCESS);
3475: }
3477: /*@
3478: PetscSectionGetSym - Get the symmetries for the data referred to by the section
3480: Not Collective
3482: Input Parameter:
3483: . section - the section describing data layout
3485: Output Parameter:
3486: . sym - the symmetry describing the affect of orientation on the access of the data, provided previously by `PetscSectionSetSym()`
3488: Level: developer
3490: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetSym()`, `PetscSectionSymCreate()`
3491: @*/
3492: PetscErrorCode PetscSectionGetSym(PetscSection section, PetscSectionSym *sym)
3493: {
3494: PetscFunctionBegin;
3496: *sym = section->sym;
3497: PetscFunctionReturn(PETSC_SUCCESS);
3498: }
3500: /*@
3501: PetscSectionSetFieldSym - Set the symmetries for the data referred to by a field of the section
3503: Collective
3505: Input Parameters:
3506: + section - the section describing data layout
3507: . field - the field number
3508: - sym - the symmetry describing the affect of orientation on the access of the data
3510: Level: developer
3512: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetFieldSym()`, `PetscSectionSymCreate()`
3513: @*/
3514: PetscErrorCode PetscSectionSetFieldSym(PetscSection section, PetscInt field, PetscSectionSym sym)
3515: {
3516: PetscFunctionBegin;
3518: PetscSectionCheckValidField(field, section->numFields);
3519: PetscCall(PetscSectionSetSym(section->field[field], sym));
3520: PetscFunctionReturn(PETSC_SUCCESS);
3521: }
3523: /*@
3524: PetscSectionGetFieldSym - Get the symmetries for the data referred to by a field of the section
3526: Collective
3528: Input Parameters:
3529: + section - the section describing data layout
3530: - field - the field number
3532: Output Parameter:
3533: . sym - the symmetry describing the affect of orientation on the access of the data
3535: Level: developer
3537: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetFieldSym()`, `PetscSectionSymCreate()`
3538: @*/
3539: PetscErrorCode PetscSectionGetFieldSym(PetscSection section, PetscInt field, PetscSectionSym *sym)
3540: {
3541: PetscFunctionBegin;
3543: PetscSectionCheckValidField(field, section->numFields);
3544: *sym = section->field[field]->sym;
3545: PetscFunctionReturn(PETSC_SUCCESS);
3546: }
3548: /*@C
3549: PetscSectionGetPointSyms - Get the symmetries for a set of points in a `PetscSection` under specific orientations.
3551: Not Collective
3553: Input Parameters:
3554: + section - the section
3555: . numPoints - the number of points
3556: - points - an array of size 2 * `numPoints`, containing a list of (point, orientation) pairs. (An orientation is an
3557: arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that
3558: context, see `DMPlexGetConeOrientation()`).
3560: Output Parameters:
3561: + perms - The permutations for the given orientations (or `NULL` if there is no symmetry or the permutation is the identity).
3562: - rots - The field rotations symmetries for the given orientations (or `NULL` if there is no symmetry or the rotations are all
3563: identity).
3565: Example of usage, gathering dofs into a local array (lArray) from a section array (sArray):
3566: .vb
3567: const PetscInt **perms;
3568: const PetscScalar **rots;
3569: PetscInt lOffset;
3571: PetscSectionGetPointSyms(section,numPoints,points,&perms,&rots);
3572: for (i = 0, lOffset = 0; i < numPoints; i++) {
3573: PetscInt point = points[2*i], dof, sOffset;
3574: const PetscInt *perm = perms ? perms[i] : NULL;
3575: const PetscScalar *rot = rots ? rots[i] : NULL;
3577: PetscSectionGetDof(section,point,&dof);
3578: PetscSectionGetOffset(section,point,&sOffset);
3580: if (perm) {for (j = 0; j < dof; j++) {lArray[lOffset + perm[j]] = sArray[sOffset + j];}}
3581: else {for (j = 0; j < dof; j++) {lArray[lOffset + j ] = sArray[sOffset + j];}}
3582: if (rot) {for (j = 0; j < dof; j++) {lArray[lOffset + j ] *= rot[j]; }}
3583: lOffset += dof;
3584: }
3585: PetscSectionRestorePointSyms(section,numPoints,points,&perms,&rots);
3586: .ve
3588: Example of usage, adding dofs into a section array (sArray) from a local array (lArray):
3589: .vb
3590: const PetscInt **perms;
3591: const PetscScalar **rots;
3592: PetscInt lOffset;
3594: PetscSectionGetPointSyms(section,numPoints,points,&perms,&rots);
3595: for (i = 0, lOffset = 0; i < numPoints; i++) {
3596: PetscInt point = points[2*i], dof, sOffset;
3597: const PetscInt *perm = perms ? perms[i] : NULL;
3598: const PetscScalar *rot = rots ? rots[i] : NULL;
3600: PetscSectionGetDof(section,point,&dof);
3601: PetscSectionGetOffset(section,point,&sOff);
3603: if (perm) {for (j = 0; j < dof; j++) {sArray[sOffset + j] += lArray[lOffset + perm[j]] * (rot ? PetscConj(rot[perm[j]]) : 1.);}}
3604: else {for (j = 0; j < dof; j++) {sArray[sOffset + j] += lArray[lOffset + j ] * (rot ? PetscConj(rot[ j ]) : 1.);}}
3605: offset += dof;
3606: }
3607: PetscSectionRestorePointSyms(section,numPoints,points,&perms,&rots);
3608: .ve
3610: Level: developer
3612: Notes:
3613: `PetscSectionSetSym()` must have been previously called to provide the symmetries to the `PetscSection`
3615: Use `PetscSectionRestorePointSyms()` when finished with the data
3617: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionRestorePointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`
3618: @*/
3619: PetscErrorCode PetscSectionGetPointSyms(PetscSection section, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots)
3620: {
3621: PetscSectionSym sym;
3623: PetscFunctionBegin;
3625: if (numPoints) PetscAssertPointer(points, 3);
3626: if (perms) *perms = NULL;
3627: if (rots) *rots = NULL;
3628: sym = section->sym;
3629: if (sym && (perms || rots)) {
3630: SymWorkLink link;
3632: if (sym->workin) {
3633: link = sym->workin;
3634: sym->workin = sym->workin->next;
3635: } else {
3636: PetscCall(PetscNew(&link));
3637: }
3638: if (numPoints > link->numPoints) {
3639: PetscInt **perms = (PetscInt **)link->perms;
3640: PetscScalar **rots = (PetscScalar **)link->rots;
3641: PetscCall(PetscFree2(perms, rots));
3642: PetscCall(PetscMalloc2(numPoints, (PetscInt ***)&link->perms, numPoints, (PetscScalar ***)&link->rots));
3643: link->numPoints = numPoints;
3644: }
3645: link->next = sym->workout;
3646: sym->workout = link;
3647: PetscCall(PetscArrayzero((PetscInt **)link->perms, numPoints));
3648: PetscCall(PetscArrayzero((PetscInt **)link->rots, numPoints));
3649: PetscUseTypeMethod(sym, getpoints, section, numPoints, points, link->perms, link->rots);
3650: if (perms) *perms = link->perms;
3651: if (rots) *rots = link->rots;
3652: }
3653: PetscFunctionReturn(PETSC_SUCCESS);
3654: }
3656: /*@C
3657: PetscSectionRestorePointSyms - Restore the symmetries returned by `PetscSectionGetPointSyms()`
3659: Not Collective
3661: Input Parameters:
3662: + section - the section
3663: . numPoints - the number of points
3664: . points - an array of size 2 * `numPoints`, containing a list of (point, orientation) pairs. (An orientation is an
3665: arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that
3666: context, see `DMPlexGetConeOrientation()`).
3667: . perms - The permutations for the given orientations: set to `NULL` at conclusion
3668: - rots - The field rotations symmetries for the given orientations: set to `NULL` at conclusion
3670: Level: developer
3672: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetPointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`
3673: @*/
3674: PetscErrorCode PetscSectionRestorePointSyms(PetscSection section, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots)
3675: {
3676: PetscSectionSym sym;
3678: PetscFunctionBegin;
3680: sym = section->sym;
3681: if (sym && (perms || rots)) {
3682: SymWorkLink *p, link;
3684: for (p = &sym->workout; (link = *p); p = &link->next) {
3685: if ((perms && link->perms == *perms) || (rots && link->rots == *rots)) {
3686: *p = link->next;
3687: link->next = sym->workin;
3688: sym->workin = link;
3689: if (perms) *perms = NULL;
3690: if (rots) *rots = NULL;
3691: PetscFunctionReturn(PETSC_SUCCESS);
3692: }
3693: }
3694: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
3695: }
3696: PetscFunctionReturn(PETSC_SUCCESS);
3697: }
3699: /*@C
3700: PetscSectionGetFieldPointSyms - Get the symmetries for a set of points in a field of a `PetscSection` under specific orientations.
3702: Not Collective
3704: Input Parameters:
3705: + section - the section
3706: . field - the field of the section
3707: . numPoints - the number of points
3708: - points - an array of size 2 * `numPoints`, containing a list of (point, orientation) pairs. (An orientation is an
3709: arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that
3710: context, see `DMPlexGetConeOrientation()`).
3712: Output Parameters:
3713: + perms - The permutations for the given orientations (or `NULL` if there is no symmetry or the permutation is the identity).
3714: - rots - The field rotations symmetries for the given orientations (or `NULL` if there is no symmetry or the rotations are all
3715: identity).
3717: Level: developer
3719: Notes:
3720: `PetscSectionSetFieldSym()` must have been previously called to provide the symmetries to the `PetscSection`
3722: Use `PetscSectionRestoreFieldPointSyms()` when finished with the data
3724: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetPointSyms()`, `PetscSectionRestoreFieldPointSyms()`
3725: @*/
3726: PetscErrorCode PetscSectionGetFieldPointSyms(PetscSection section, PetscInt field, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots)
3727: {
3728: PetscFunctionBegin;
3730: PetscCheck(field <= section->numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "field %" PetscInt_FMT " greater than number of fields (%" PetscInt_FMT ") in section", field, section->numFields);
3731: PetscCall(PetscSectionGetPointSyms(section->field[field], numPoints, points, perms, rots));
3732: PetscFunctionReturn(PETSC_SUCCESS);
3733: }
3735: /*@C
3736: PetscSectionRestoreFieldPointSyms - Restore the symmetries returned by `PetscSectionGetFieldPointSyms()`
3738: Not Collective
3740: Input Parameters:
3741: + section - the section
3742: . field - the field number
3743: . numPoints - the number of points
3744: . points - an array of size 2 * `numPoints`, containing a list of (point, orientation) pairs. (An orientation is an
3745: arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that
3746: context, see `DMPlexGetConeOrientation()`).
3747: . perms - The permutations for the given orientations: set to NULL at conclusion
3748: - rots - The field rotations symmetries for the given orientations: set to NULL at conclusion
3750: Level: developer
3752: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionRestorePointSyms()`, `petscSectionGetFieldPointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`
3753: @*/
3754: PetscErrorCode PetscSectionRestoreFieldPointSyms(PetscSection section, PetscInt field, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots)
3755: {
3756: PetscFunctionBegin;
3758: PetscCheck(field <= section->numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "field %" PetscInt_FMT " greater than number of fields (%" PetscInt_FMT ") in section", field, section->numFields);
3759: PetscCall(PetscSectionRestorePointSyms(section->field[field], numPoints, points, perms, rots));
3760: PetscFunctionReturn(PETSC_SUCCESS);
3761: }
3763: /*@
3764: PetscSectionSymCopy - Copy the symmetries, assuming that the point structure is compatible
3766: Not Collective
3768: Input Parameter:
3769: . sym - the `PetscSectionSym`
3771: Output Parameter:
3772: . nsym - the equivalent symmetries
3774: Level: developer
3776: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`, `PetscSectionSymLabelSetStratum()`, `PetscSectionGetPointSyms()`
3777: @*/
3778: PetscErrorCode PetscSectionSymCopy(PetscSectionSym sym, PetscSectionSym nsym)
3779: {
3780: PetscFunctionBegin;
3783: PetscTryTypeMethod(sym, copy, nsym);
3784: PetscFunctionReturn(PETSC_SUCCESS);
3785: }
3787: /*@
3788: PetscSectionSymDistribute - Distribute the symmetries in accordance with the input `PetscSF`
3790: Collective
3792: Input Parameters:
3793: + sym - the `PetscSectionSym`
3794: - migrationSF - the distribution map from roots to leaves
3796: Output Parameter:
3797: . dsym - the redistributed symmetries
3799: Level: developer
3801: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`, `PetscSectionSymLabelSetStratum()`, `PetscSectionGetPointSyms()`
3802: @*/
3803: PetscErrorCode PetscSectionSymDistribute(PetscSectionSym sym, PetscSF migrationSF, PetscSectionSym *dsym)
3804: {
3805: PetscFunctionBegin;
3808: PetscAssertPointer(dsym, 3);
3809: PetscTryTypeMethod(sym, distribute, migrationSF, dsym);
3810: PetscFunctionReturn(PETSC_SUCCESS);
3811: }
3813: /*@
3814: PetscSectionGetUseFieldOffsets - Get the flag indicating if field offsets are used directly in a global section, rather than just the point offset
3816: Not Collective
3818: Input Parameter:
3819: . s - the global `PetscSection`
3821: Output Parameter:
3822: . flg - the flag
3824: Level: developer
3826: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetChart()`, `PetscSectionCreate()`
3827: @*/
3828: PetscErrorCode PetscSectionGetUseFieldOffsets(PetscSection s, PetscBool *flg)
3829: {
3830: PetscFunctionBegin;
3832: *flg = s->useFieldOff;
3833: PetscFunctionReturn(PETSC_SUCCESS);
3834: }
3836: /*@
3837: PetscSectionSetUseFieldOffsets - Set the flag to use field offsets directly in a global section, rather than just the point offset
3839: Not Collective
3841: Input Parameters:
3842: + s - the global `PetscSection`
3843: - flg - the flag
3845: Level: developer
3847: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetUseFieldOffsets()`, `PetscSectionSetChart()`, `PetscSectionCreate()`
3848: @*/
3849: PetscErrorCode PetscSectionSetUseFieldOffsets(PetscSection s, PetscBool flg)
3850: {
3851: PetscFunctionBegin;
3853: s->useFieldOff = flg;
3854: PetscFunctionReturn(PETSC_SUCCESS);
3855: }
3857: #define PetscSectionExpandPoints_Loop(TYPE) \
3858: do { \
3859: PetscInt i, n, o0, o1, size; \
3860: TYPE *a0 = (TYPE *)origArray, *a1; \
3861: PetscCall(PetscSectionGetStorageSize(s, &size)); \
3862: PetscCall(PetscMalloc1(size, &a1)); \
3863: for (i = 0; i < npoints; i++) { \
3864: PetscCall(PetscSectionGetOffset(origSection, points_[i], &o0)); \
3865: PetscCall(PetscSectionGetOffset(s, i, &o1)); \
3866: PetscCall(PetscSectionGetDof(s, i, &n)); \
3867: PetscCall(PetscMemcpy(&a1[o1], &a0[o0], n *unitsize)); \
3868: } \
3869: *newArray = (void *)a1; \
3870: } while (0)
3872: /*@
3873: PetscSectionExtractDofsFromArray - Extracts elements of an array corresponding to DOFs of specified points.
3875: Not Collective
3877: Input Parameters:
3878: + origSection - the `PetscSection` describing the layout of the array
3879: . dataType - `MPI_Datatype` describing the data type of the array (currently only `MPIU_INT`, `MPIU_SCALAR`, `MPIU_REAL`)
3880: . origArray - the array; its size must be equal to the storage size of `origSection`
3881: - points - `IS` with points to extract; its indices must lie in the chart of `origSection`
3883: Output Parameters:
3884: + newSection - the new `PetscSection` describing the layout of the new array (with points renumbered 0,1,... but preserving numbers of DOFs)
3885: - newArray - the array of the extracted DOFs; its size is the storage size of `newSection`
3887: Level: developer
3889: .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetChart()`, `PetscSectionGetDof()`, `PetscSectionGetStorageSize()`, `PetscSectionCreate()`
3890: @*/
3891: PetscErrorCode PetscSectionExtractDofsFromArray(PetscSection origSection, MPI_Datatype dataType, const void *origArray, IS points, PetscSection *newSection, void *newArray[])
3892: {
3893: PetscSection s;
3894: const PetscInt *points_;
3895: PetscInt i, n, npoints, pStart, pEnd;
3896: PetscMPIInt unitsize;
3898: PetscFunctionBegin;
3900: PetscAssertPointer(origArray, 3);
3902: if (newSection) PetscAssertPointer(newSection, 5);
3903: if (newArray) PetscAssertPointer(newArray, 6);
3904: PetscCallMPI(MPI_Type_size(dataType, &unitsize));
3905: PetscCall(ISGetLocalSize(points, &npoints));
3906: PetscCall(ISGetIndices(points, &points_));
3907: PetscCall(PetscSectionGetChart(origSection, &pStart, &pEnd));
3908: PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &s));
3909: PetscCall(PetscSectionSetChart(s, 0, npoints));
3910: for (i = 0; i < npoints; i++) {
3911: PetscCheck(points_[i] >= pStart && points_[i] < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "point %" PetscInt_FMT " (index %" PetscInt_FMT ") in input IS out of input section's chart", points_[i], i);
3912: PetscCall(PetscSectionGetDof(origSection, points_[i], &n));
3913: PetscCall(PetscSectionSetDof(s, i, n));
3914: }
3915: PetscCall(PetscSectionSetUp(s));
3916: if (newArray) {
3917: if (dataType == MPIU_INT) {
3918: PetscSectionExpandPoints_Loop(PetscInt);
3919: } else if (dataType == MPIU_SCALAR) {
3920: PetscSectionExpandPoints_Loop(PetscScalar);
3921: } else if (dataType == MPIU_REAL) {
3922: PetscSectionExpandPoints_Loop(PetscReal);
3923: } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "not implemented for this MPI_Datatype");
3924: }
3925: if (newSection) {
3926: *newSection = s;
3927: } else {
3928: PetscCall(PetscSectionDestroy(&s));
3929: }
3930: PetscCall(ISRestoreIndices(points, &points_));
3931: PetscFunctionReturn(PETSC_SUCCESS);
3932: }