Actual source code: sfallgatherv.c
1: #include <../src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h>
3: /* PetscSFGetGraph is non-collective. An implementation should not have collective calls */
4: PETSC_INTERN PetscErrorCode PetscSFGetGraph_Allgatherv(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote)
5: {
6: PetscInt i, j, k;
7: const PetscInt *range;
8: PetscMPIInt size;
10: PetscFunctionBegin;
11: PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size));
12: if (nroots) *nroots = sf->nroots;
13: if (nleaves) *nleaves = sf->nleaves;
14: if (ilocal) *ilocal = NULL; /* Contiguous leaves */
15: if (iremote) {
16: if (!sf->remote && sf->nleaves) { /* The && sf->nleaves makes sfgatherv able to inherit this routine */
17: PetscCall(PetscLayoutGetRanges(sf->map, &range));
18: PetscCall(PetscMalloc1(sf->nleaves, &sf->remote));
19: sf->remote_alloc = sf->remote;
20: for (i = 0; i < size; i++) {
21: for (j = range[i], k = 0; j < range[i + 1]; j++, k++) {
22: sf->remote[j].rank = i;
23: sf->remote[j].index = k;
24: }
25: }
26: }
27: *iremote = sf->remote;
28: }
29: PetscFunctionReturn(PETSC_SUCCESS);
30: }
32: PETSC_INTERN PetscErrorCode PetscSFSetUp_Allgatherv(PetscSF sf)
33: {
34: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
35: PetscMPIInt size;
36: PetscInt i;
37: const PetscInt *range;
38: MPI_Comm comm;
40: PetscFunctionBegin;
41: PetscCall(PetscSFSetUp_Allgather(sf));
42: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
43: PetscCallMPI(MPI_Comm_size(comm, &size));
44: if (sf->nleaves) { /* This if (sf->nleaves) test makes sfgatherv able to inherit this routine */
45: PetscBool isallgatherv = PETSC_FALSE;
47: PetscCall(PetscMalloc1(size, &dat->recvcounts));
48: PetscCall(PetscMalloc1(size, &dat->displs));
49: PetscCall(PetscLayoutGetRanges(sf->map, &range));
51: for (i = 0; i < size; i++) {
52: PetscCall(PetscMPIIntCast(range[i], &dat->displs[i]));
53: PetscCall(PetscMPIIntCast(range[i + 1] - range[i], &dat->recvcounts[i]));
54: }
56: /* check if we actually have a one-to-all pattern */
57: PetscCall(PetscObjectTypeCompare((PetscObject)sf, PETSCSFALLGATHERV, &isallgatherv));
58: if (isallgatherv) {
59: PetscMPIInt rank, nRanksWithZeroRoots;
61: nRanksWithZeroRoots = (sf->nroots == 0) ? 1 : 0; /* I have no roots */
62: PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &nRanksWithZeroRoots, 1, MPI_INT, MPI_SUM, comm));
63: if (nRanksWithZeroRoots == size - 1) { /* Only one rank has roots, which indicates a bcast pattern */
64: dat->bcast_pattern = PETSC_TRUE;
65: PetscCallMPI(MPI_Comm_rank(comm, &rank));
66: dat->bcast_root = sf->nroots > 0 ? rank : -1;
67: PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &dat->bcast_root, 1, MPI_INT, MPI_MAX, comm));
68: }
69: }
70: }
71: PetscFunctionReturn(PETSC_SUCCESS);
72: }
74: PETSC_INTERN PetscErrorCode PetscSFReset_Allgatherv(PetscSF sf)
75: {
76: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
77: PetscSFLink link = dat->avail, next;
79: PetscFunctionBegin;
80: PetscCall(PetscFree(dat->iranks));
81: PetscCall(PetscFree(dat->ioffset));
82: PetscCall(PetscFree(dat->irootloc));
83: PetscCall(PetscFree(dat->recvcounts));
84: PetscCall(PetscFree(dat->displs));
85: PetscCheck(!dat->inuse, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Outstanding operation has not been completed");
86: for (; link; link = next) {
87: next = link->next;
88: PetscCall(PetscSFLinkDestroy(sf, link));
89: }
90: dat->avail = NULL;
91: PetscFunctionReturn(PETSC_SUCCESS);
92: }
94: PETSC_INTERN PetscErrorCode PetscSFDestroy_Allgatherv(PetscSF sf)
95: {
96: PetscFunctionBegin;
97: PetscCall(PetscSFReset_Allgatherv(sf));
98: PetscCall(PetscFree(sf->data));
99: PetscFunctionReturn(PETSC_SUCCESS);
100: }
102: static PetscErrorCode PetscSFBcastBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op)
103: {
104: PetscSFLink link;
105: PetscMPIInt sendcount, rank;
106: MPI_Comm comm;
107: void *rootbuf = NULL, *leafbuf = NULL;
108: MPI_Request *req = NULL;
109: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
111: PetscFunctionBegin;
112: PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_BCAST, &link));
113: PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata));
114: PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */));
115: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
116: PetscCallMPI(MPI_Comm_rank(comm, &rank));
117: PetscCall(PetscMPIIntCast(sf->nroots, &sendcount));
118: PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL));
120: if (dat->bcast_pattern && rank == dat->bcast_root) PetscCall((*link->Memcpy)(link, link->leafmtype_mpi, leafbuf, link->rootmtype_mpi, rootbuf, (size_t)sendcount * link->unitbytes));
121: /* Ready the buffers for MPI */
122: PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_ROOT2LEAF));
123: if (dat->bcast_pattern) PetscCallMPI(MPIU_Ibcast(leafbuf, sf->nleaves, unit, dat->bcast_root, comm, req));
124: else PetscCallMPI(MPIU_Iallgatherv(rootbuf, sendcount, unit, leafbuf, dat->recvcounts, dat->displs, unit, comm, req));
125: PetscFunctionReturn(PETSC_SUCCESS);
126: }
128: static PetscErrorCode PetscSFReduceBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op)
129: {
130: PetscSFLink link;
131: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
132: PetscInt rstart;
133: PetscMPIInt rank, count, recvcount;
134: MPI_Comm comm;
135: void *rootbuf = NULL, *leafbuf = NULL;
136: MPI_Request *req = NULL;
138: PetscFunctionBegin;
139: PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_REDUCE, &link));
140: if (op == MPI_REPLACE) {
141: /* REPLACE is only meaningful when all processes have the same leafdata to reduce. Therefore copying from local leafdata is fine */
142: PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL));
143: PetscCall((*link->Memcpy)(link, rootmtype, rootdata, leafmtype, (const char *)leafdata + (size_t)rstart * link->unitbytes, (size_t)sf->nroots * link->unitbytes));
144: if (PetscMemTypeDevice(leafmtype) && PetscMemTypeHost(rootmtype)) PetscCall((*link->SyncStream)(link));
145: } else {
146: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
147: PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata));
148: PetscCall(PetscSFLinkCopyLeafBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */));
149: PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_LEAF2ROOT, &rootbuf, &leafbuf, &req, NULL));
150: PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_LEAF2ROOT));
151: if (dat->bcast_pattern) {
152: #if defined(PETSC_HAVE_OMPI_MAJOR_VERSION) /* Workaround: cuda-aware Open MPI 4.1.3 does not support MPI_Ireduce() with device buffers */
153: *req = MPI_REQUEST_NULL; /* Set NULL so that we can safely MPI_Wait(req) */
154: PetscCallMPI(MPI_Reduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm));
155: #else
156: PetscCallMPI(MPIU_Ireduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm, req));
157: #endif
158: } else { /* Reduce leafdata, then scatter to rootdata */
159: PetscCallMPI(MPI_Comm_rank(comm, &rank));
160: PetscCall(PetscMPIIntCast(dat->rootbuflen[PETSCSF_REMOTE], &recvcount));
161: /* Allocate a separate leaf buffer on rank 0 */
162: if (rank == 0 && !link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi]) {
163: PetscCall(PetscSFMalloc(sf, link->leafmtype_mpi, sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes, (void **)&link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi]));
164: }
165: /* In case we already copied leafdata from device to host (i.e., no use_gpu_aware_mpi), we need to adjust leafbuf on rank 0 */
166: if (rank == 0 && link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi] == leafbuf) leafbuf = MPI_IN_PLACE;
167: PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count));
168: PetscCallMPI(MPI_Reduce(leafbuf, link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], count, link->basicunit, op, 0, comm)); /* Must do reduce with MPI builtin datatype basicunit */
169: PetscCallMPI(MPIU_Iscatterv(link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], dat->recvcounts, dat->displs, unit, rootbuf, recvcount, unit, 0, comm, req));
170: }
171: }
172: PetscFunctionReturn(PETSC_SUCCESS);
173: }
175: PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op)
176: {
177: PetscSFLink link;
179: PetscFunctionBegin;
180: if (op == MPI_REPLACE) {
181: /* A rare case happens when op is MPI_REPLACE, using GPUs but no GPU aware MPI. In PetscSFReduceBegin_Allgather(v),
182: we did a device to device copy and in effect finished the communication. But in PetscSFLinkFinishCommunication()
183: of PetscSFReduceEnd_Basic(), it thinks since there is rootbuf, it calls PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI().
184: It does a host to device memory copy on rootbuf, wrongly overwriting the results. So we don't overload
185: PetscSFReduceEnd_Basic() in this case, and just reclaim the link.
186: */
187: PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link));
188: PetscCall(PetscSFLinkReclaim(sf, &link));
189: } else {
190: PetscCall(PetscSFReduceEnd_Basic(sf, unit, leafdata, rootdata, op));
191: }
192: PetscFunctionReturn(PETSC_SUCCESS);
193: }
195: static PetscErrorCode PetscSFBcastToZero_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata)
196: {
197: PetscSFLink link;
198: PetscMPIInt rank;
199: PetscMPIInt sendcount;
200: MPI_Comm comm;
201: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
202: void *rootbuf = NULL, *leafbuf = NULL; /* buffer seen by MPI */
203: MPI_Request *req = NULL;
205: PetscFunctionBegin;
206: PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, MPI_REPLACE, PETSCSF_BCAST, &link));
207: PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata));
208: PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */));
209: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
210: PetscCall(PetscMPIIntCast(sf->nroots, &sendcount));
211: PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL));
212: PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_ROOT2LEAF));
213: PetscCallMPI(MPIU_Igatherv(rootbuf, sendcount, unit, leafbuf, dat->recvcounts, dat->displs, unit, 0 /*rank 0*/, comm, req));
215: PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link));
216: PetscCall(PetscSFLinkFinishCommunication(sf, link, PETSCSF_ROOT2LEAF));
217: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
218: if (rank == 0 && PetscMemTypeDevice(leafmtype) && !sf->use_gpu_aware_mpi) PetscCall((*link->Memcpy)(link, PETSC_MEMTYPE_DEVICE, leafdata, PETSC_MEMTYPE_HOST, link->leafbuf[PETSC_MEMTYPE_HOST], sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes));
219: PetscCall(PetscSFLinkReclaim(sf, &link));
220: PetscFunctionReturn(PETSC_SUCCESS);
221: }
223: /* This routine is very tricky (I believe it is rarely used with this kind of graph so just provide a simple but not-optimal implementation).
225: Suppose we have three ranks. Rank 0 has a root with value 1. Rank 0,1,2 has a leaf with value 2,3,4 respectively. The leaves are connected
226: to the root on rank 0. Suppose op=MPI_SUM and rank 0,1,2 gets root state in their rank order. By definition of this routine, rank 0 sees 1
227: in root, fetches it into its leafupate, then updates root to 1 + 2 = 3; rank 1 sees 3 in root, fetches it into its leafupate, then updates
228: root to 3 + 3 = 6; rank 2 sees 6 in root, fetches it into its leafupdate, then updates root to 6 + 4 = 10. At the end, leafupdate on rank
229: 0,1,2 is 1,3,6 respectively. root is 10.
231: We use a simpler implementation. From the same initial state, we copy leafdata to leafupdate
232: rank-0 rank-1 rank-2
233: Root 1
234: Leaf 2 3 4
235: Leafupdate 2 3 4
237: Do MPI_Exscan on leafupdate,
238: rank-0 rank-1 rank-2
239: Root 1
240: Leaf 2 3 4
241: Leafupdate 2 2 5
243: BcastAndOp from root to leafupdate,
244: rank-0 rank-1 rank-2
245: Root 1
246: Leaf 2 3 4
247: Leafupdate 3 3 6
249: Copy root to leafupdate on rank-0
250: rank-0 rank-1 rank-2
251: Root 1
252: Leaf 2 3 4
253: Leafupdate 1 3 6
255: Reduce from leaf to root,
256: rank-0 rank-1 rank-2
257: Root 10
258: Leaf 2 3 4
259: Leafupdate 1 3 6
260: */
261: PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, void *leafupdate, MPI_Op op)
262: {
263: PetscSFLink link;
264: MPI_Comm comm;
265: PetscMPIInt count;
267: PetscFunctionBegin;
268: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
269: PetscCheck(!PetscMemTypeDevice(rootmtype) && !PetscMemTypeDevice(leafmtype), comm, PETSC_ERR_SUP, "Do FetchAndOp on device");
270: /* Copy leafdata to leafupdate */
271: PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_FETCH, &link));
272: PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); /* Sync the device */
273: PetscCall((*link->Memcpy)(link, leafmtype, leafupdate, leafmtype, leafdata, sf->nleaves * link->unitbytes));
274: PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link));
276: /* Exscan on leafupdate and then BcastAndOp rootdata to leafupdate */
277: if (op == MPI_REPLACE) {
278: PetscMPIInt size, rank, prev, next;
279: PetscCallMPI(MPI_Comm_rank(comm, &rank));
280: PetscCallMPI(MPI_Comm_size(comm, &size));
281: prev = rank ? rank - 1 : MPI_PROC_NULL;
282: next = (rank < size - 1) ? rank + 1 : MPI_PROC_NULL;
283: PetscCall(PetscMPIIntCast(sf->nleaves, &count));
284: PetscCallMPI(MPI_Sendrecv_replace(leafupdate, count, unit, next, link->tag, prev, link->tag, comm, MPI_STATUSES_IGNORE));
285: } else {
286: PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count));
287: PetscCallMPI(MPI_Exscan(MPI_IN_PLACE, leafupdate, count, link->basicunit, op, comm));
288: }
289: PetscCall(PetscSFLinkReclaim(sf, &link));
290: PetscCall(PetscSFBcastBegin(sf, unit, rootdata, leafupdate, op));
291: PetscCall(PetscSFBcastEnd(sf, unit, rootdata, leafupdate, op));
293: /* Bcast roots to rank 0's leafupdate */
294: PetscCall(PetscSFBcastToZero_Private(sf, unit, rootdata, leafupdate)); /* Using this line makes Allgather SFs able to inherit this routine */
296: /* Reduce leafdata to rootdata */
297: PetscCall(PetscSFReduceBegin(sf, unit, leafdata, rootdata, op));
298: PetscFunctionReturn(PETSC_SUCCESS);
299: }
301: PETSC_INTERN PetscErrorCode PetscSFFetchAndOpEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op)
302: {
303: PetscFunctionBegin;
304: PetscCall(PetscSFReduceEnd(sf, unit, leafdata, rootdata, op));
305: PetscFunctionReturn(PETSC_SUCCESS);
306: }
308: /* Get root ranks accessing my leaves */
309: PETSC_INTERN PetscErrorCode PetscSFGetRootRanks_Allgatherv(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote)
310: {
311: PetscInt i, j, k, size;
312: const PetscInt *range;
314: PetscFunctionBegin;
315: /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */
316: if (sf->nranks && !sf->ranks) { /* On rank!=0, sf->nranks=0. The sf->nranks test makes this routine also works for sfgatherv */
317: size = sf->nranks;
318: PetscCall(PetscLayoutGetRanges(sf->map, &range));
319: PetscCall(PetscMalloc4(size, &sf->ranks, size + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote));
320: for (i = 0; i < size; i++) sf->ranks[i] = i;
321: PetscCall(PetscArraycpy(sf->roffset, range, size + 1));
322: for (i = 0; i < sf->nleaves; i++) sf->rmine[i] = i; /*rmine are never NULL even for contiguous leaves */
323: for (i = 0; i < size; i++) {
324: for (j = range[i], k = 0; j < range[i + 1]; j++, k++) sf->rremote[j] = k;
325: }
326: }
328: if (nranks) *nranks = sf->nranks;
329: if (ranks) *ranks = sf->ranks;
330: if (roffset) *roffset = sf->roffset;
331: if (rmine) *rmine = sf->rmine;
332: if (rremote) *rremote = sf->rremote;
333: PetscFunctionReturn(PETSC_SUCCESS);
334: }
336: /* Get leaf ranks accessing my roots */
337: PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Allgatherv(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc)
338: {
339: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
340: MPI_Comm comm;
341: PetscMPIInt size, rank;
342: PetscInt i, j;
344: PetscFunctionBegin;
345: /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */
346: PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
347: PetscCallMPI(MPI_Comm_size(comm, &size));
348: PetscCallMPI(MPI_Comm_rank(comm, &rank));
349: if (niranks) *niranks = size;
351: /* PetscSF_Basic has distinguished incoming ranks. Here we do not need that. But we must put self as the first and
352: sort other ranks. See comments in PetscSFSetUp_Basic about MatGetBrowsOfAoCols_MPIAIJ on why.
353: */
354: if (iranks) {
355: if (!dat->iranks) {
356: PetscCall(PetscMalloc1(size, &dat->iranks));
357: dat->iranks[0] = rank;
358: for (i = 0, j = 1; i < size; i++) {
359: if (i == rank) continue;
360: dat->iranks[j++] = i;
361: }
362: }
363: *iranks = dat->iranks; /* dat->iranks was init'ed to NULL by PetscNew */
364: }
366: if (ioffset) {
367: if (!dat->ioffset) {
368: PetscCall(PetscMalloc1(size + 1, &dat->ioffset));
369: for (i = 0; i <= size; i++) dat->ioffset[i] = i * sf->nroots;
370: }
371: *ioffset = dat->ioffset;
372: }
374: if (irootloc) {
375: if (!dat->irootloc) {
376: PetscCall(PetscMalloc1(sf->nleaves, &dat->irootloc));
377: for (i = 0; i < size; i++) {
378: for (j = 0; j < sf->nroots; j++) dat->irootloc[i * sf->nroots + j] = j;
379: }
380: }
381: *irootloc = dat->irootloc;
382: }
383: PetscFunctionReturn(PETSC_SUCCESS);
384: }
386: PETSC_INTERN PetscErrorCode PetscSFCreateLocalSF_Allgatherv(PetscSF sf, PetscSF *out)
387: {
388: PetscInt i, nroots, nleaves, rstart, *ilocal;
389: PetscSFNode *iremote;
390: PetscSF lsf;
392: PetscFunctionBegin;
393: nleaves = sf->nleaves ? sf->nroots : 0; /* sf->nleaves can be zero with SFGather(v) */
394: nroots = nleaves;
395: PetscCall(PetscMalloc1(nleaves, &ilocal));
396: PetscCall(PetscMalloc1(nleaves, &iremote));
397: PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL));
399: for (i = 0; i < nleaves; i++) {
400: ilocal[i] = rstart + i; /* lsf does not change leave indices */
401: iremote[i].rank = 0; /* rank in PETSC_COMM_SELF */
402: iremote[i].index = i; /* root index */
403: }
405: PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf));
406: PetscCall(PetscSFSetGraph(lsf, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
407: PetscCall(PetscSFSetUp(lsf));
408: *out = lsf;
409: PetscFunctionReturn(PETSC_SUCCESS);
410: }
412: PETSC_INTERN PetscErrorCode PetscSFCreate_Allgatherv(PetscSF sf)
413: {
414: PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data;
416: PetscFunctionBegin;
417: sf->ops->BcastEnd = PetscSFBcastEnd_Basic;
418: sf->ops->ReduceEnd = PetscSFReduceEnd_Allgatherv;
420: sf->ops->SetUp = PetscSFSetUp_Allgatherv;
421: sf->ops->Reset = PetscSFReset_Allgatherv;
422: sf->ops->Destroy = PetscSFDestroy_Allgatherv;
423: sf->ops->GetRootRanks = PetscSFGetRootRanks_Allgatherv;
424: sf->ops->GetLeafRanks = PetscSFGetLeafRanks_Allgatherv;
425: sf->ops->GetGraph = PetscSFGetGraph_Allgatherv;
426: sf->ops->BcastBegin = PetscSFBcastBegin_Allgatherv;
427: sf->ops->ReduceBegin = PetscSFReduceBegin_Allgatherv;
428: sf->ops->FetchAndOpBegin = PetscSFFetchAndOpBegin_Allgatherv;
429: sf->ops->FetchAndOpEnd = PetscSFFetchAndOpEnd_Allgatherv;
430: sf->ops->CreateLocalSF = PetscSFCreateLocalSF_Allgatherv;
431: sf->ops->BcastToZero = PetscSFBcastToZero_Allgatherv;
433: sf->collective = PETSC_TRUE;
435: PetscCall(PetscNew(&dat));
436: dat->bcast_root = -1;
437: sf->data = (void *)dat;
438: PetscFunctionReturn(PETSC_SUCCESS);
439: }