Actual source code: mpibaij.c
1: #include <../src/mat/impls/baij/mpi/mpibaij.h>
3: #include <petsc/private/hashseti.h>
4: #include <petscblaslapack.h>
5: #include <petscsf.h>
7: static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
8: {
9: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
11: PetscFunctionBegin;
12: PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
13: PetscCall(MatStashDestroy_Private(&mat->stash));
14: PetscCall(MatStashDestroy_Private(&mat->bstash));
15: PetscCall(MatDestroy(&baij->A));
16: PetscCall(MatDestroy(&baij->B));
17: #if defined(PETSC_USE_CTABLE)
18: PetscCall(PetscHMapIDestroy(&baij->colmap));
19: #else
20: PetscCall(PetscFree(baij->colmap));
21: #endif
22: PetscCall(PetscFree(baij->garray));
23: PetscCall(VecDestroy(&baij->lvec));
24: PetscCall(VecScatterDestroy(&baij->Mvctx));
25: PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
26: PetscCall(PetscFree(baij->barray));
27: PetscCall(PetscFree2(baij->hd, baij->ht));
28: PetscCall(PetscFree(baij->rangebs));
29: PetscCall(PetscFree(mat->data));
31: PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
32: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
33: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
34: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
35: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
36: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
37: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
38: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
39: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
40: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
41: #if defined(PETSC_HAVE_HYPRE)
42: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
43: #endif
44: PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
45: PetscFunctionReturn(PETSC_SUCCESS);
46: }
48: /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
49: #define TYPE BAIJ
50: #include "../src/mat/impls/aij/mpi/mpihashmat.h"
51: #undef TYPE
53: #if defined(PETSC_HAVE_HYPRE)
54: PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
55: #endif
57: static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58: {
59: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
60: PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61: PetscScalar *vv;
62: Vec vB, vA;
63: const PetscScalar *va, *vb;
65: PetscFunctionBegin;
66: PetscCall(MatCreateVecs(a->A, NULL, &vA));
67: PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
69: PetscCall(VecGetArrayRead(vA, &va));
70: if (idx) {
71: for (i = 0; i < m; i++) {
72: if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
73: }
74: }
76: PetscCall(MatCreateVecs(a->B, NULL, &vB));
77: PetscCall(PetscMalloc1(m, &idxb));
78: PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
80: PetscCall(VecGetArrayWrite(v, &vv));
81: PetscCall(VecGetArrayRead(vB, &vb));
82: for (i = 0; i < m; i++) {
83: if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
84: vv[i] = vb[i];
85: if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
86: } else {
87: vv[i] = va[i];
88: if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
89: }
90: }
91: PetscCall(VecRestoreArrayWrite(v, &vv));
92: PetscCall(VecRestoreArrayRead(vA, &va));
93: PetscCall(VecRestoreArrayRead(vB, &vb));
94: PetscCall(PetscFree(idxb));
95: PetscCall(VecDestroy(&vA));
96: PetscCall(VecDestroy(&vB));
97: PetscFunctionReturn(PETSC_SUCCESS);
98: }
100: static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101: {
102: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103: Vec vB, vA;
105: PetscFunctionBegin;
106: PetscCall(MatCreateVecs(a->A, NULL, &vA));
107: PetscCall(MatGetRowSumAbs(a->A, vA));
108: PetscCall(MatCreateVecs(a->B, NULL, &vB));
109: PetscCall(MatGetRowSumAbs(a->B, vB));
110: PetscCall(VecAXPY(vA, 1.0, vB));
111: PetscCall(VecDestroy(&vB));
112: PetscCall(VecCopy(vA, v));
113: PetscCall(VecDestroy(&vA));
114: PetscFunctionReturn(PETSC_SUCCESS);
115: }
117: static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118: {
119: Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
121: PetscFunctionBegin;
122: PetscCall(MatStoreValues(aij->A));
123: PetscCall(MatStoreValues(aij->B));
124: PetscFunctionReturn(PETSC_SUCCESS);
125: }
127: static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128: {
129: Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
131: PetscFunctionBegin;
132: PetscCall(MatRetrieveValues(aij->A));
133: PetscCall(MatRetrieveValues(aij->B));
134: PetscFunctionReturn(PETSC_SUCCESS);
135: }
137: /*
138: Local utility routine that creates a mapping from the global column
139: number to the local number in the off-diagonal part of the local
140: storage of the matrix. This is done in a non scalable way since the
141: length of colmap equals the global matrix length.
142: */
143: PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144: {
145: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
146: Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data;
147: PetscInt nbs = B->nbs, i, bs = mat->rmap->bs;
149: PetscFunctionBegin;
150: #if defined(PETSC_USE_CTABLE)
151: PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152: for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
153: #else
154: PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155: for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
156: #endif
157: PetscFunctionReturn(PETSC_SUCCESS);
158: }
160: #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161: do { \
162: brow = row / bs; \
163: rp = PetscSafePointerPlusOffset(aj, ai[brow]); \
164: ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
165: rmax = aimax[brow]; \
166: nrow = ailen[brow]; \
167: bcol = col / bs; \
168: ridx = row % bs; \
169: cidx = col % bs; \
170: low = 0; \
171: high = nrow; \
172: while (high - low > 3) { \
173: t = (low + high) / 2; \
174: if (rp[t] > bcol) high = t; \
175: else low = t; \
176: } \
177: for (_i = low; _i < high; _i++) { \
178: if (rp[_i] > bcol) break; \
179: if (rp[_i] == bcol) { \
180: bap = ap + bs2 * _i + bs * cidx + ridx; \
181: if (addv == ADD_VALUES) *bap += value; \
182: else *bap = value; \
183: goto a_noinsert; \
184: } \
185: } \
186: if (a->nonew == 1) goto a_noinsert; \
187: PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188: MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
189: N = nrow++ - 1; \
190: /* shift up all the later entries in this row */ \
191: PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
192: PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
193: PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
194: rp[_i] = bcol; \
195: ap[bs2 * _i + bs * cidx + ridx] = value; \
196: a_noinsert:; \
197: ailen[brow] = nrow; \
198: } while (0)
200: #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201: do { \
202: brow = row / bs; \
203: rp = PetscSafePointerPlusOffset(bj, bi[brow]); \
204: ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
205: rmax = bimax[brow]; \
206: nrow = bilen[brow]; \
207: bcol = col / bs; \
208: ridx = row % bs; \
209: cidx = col % bs; \
210: low = 0; \
211: high = nrow; \
212: while (high - low > 3) { \
213: t = (low + high) / 2; \
214: if (rp[t] > bcol) high = t; \
215: else low = t; \
216: } \
217: for (_i = low; _i < high; _i++) { \
218: if (rp[_i] > bcol) break; \
219: if (rp[_i] == bcol) { \
220: bap = ap + bs2 * _i + bs * cidx + ridx; \
221: if (addv == ADD_VALUES) *bap += value; \
222: else *bap = value; \
223: goto b_noinsert; \
224: } \
225: } \
226: if (b->nonew == 1) goto b_noinsert; \
227: PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228: MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229: N = nrow++ - 1; \
230: /* shift up all the later entries in this row */ \
231: PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
232: PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
233: PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234: rp[_i] = bcol; \
235: ap[bs2 * _i + bs * cidx + ridx] = value; \
236: b_noinsert:; \
237: bilen[brow] = nrow; \
238: } while (0)
240: PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241: {
242: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
243: MatScalar value;
244: PetscBool roworiented = baij->roworiented;
245: PetscInt i, j, row, col;
246: PetscInt rstart_orig = mat->rmap->rstart;
247: PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248: PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
250: /* Some Variables required in the macro */
251: Mat A = baij->A;
252: Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
253: PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
254: MatScalar *aa = a->a;
256: Mat B = baij->B;
257: Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data;
258: PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
259: MatScalar *ba = b->a;
261: PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol;
262: PetscInt low, high, t, ridx, cidx, bs2 = a->bs2;
263: MatScalar *ap, *bap;
265: PetscFunctionBegin;
266: for (i = 0; i < m; i++) {
267: if (im[i] < 0) continue;
268: PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
269: if (im[i] >= rstart_orig && im[i] < rend_orig) {
270: row = im[i] - rstart_orig;
271: for (j = 0; j < n; j++) {
272: if (in[j] >= cstart_orig && in[j] < cend_orig) {
273: col = in[j] - cstart_orig;
274: if (roworiented) value = v[i * n + j];
275: else value = v[i + j * m];
276: MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277: } else if (in[j] < 0) {
278: continue;
279: } else {
280: PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
281: if (mat->was_assembled) {
282: if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283: #if defined(PETSC_USE_CTABLE)
284: PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285: col = col - 1;
286: #else
287: col = baij->colmap[in[j] / bs] - 1;
288: #endif
289: if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
290: PetscCall(MatDisAssemble_MPIBAIJ(mat));
291: col = in[j];
292: /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
293: B = baij->B;
294: b = (Mat_SeqBAIJ *)B->data;
295: bimax = b->imax;
296: bi = b->i;
297: bilen = b->ilen;
298: bj = b->j;
299: ba = b->a;
300: } else {
301: PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302: col += in[j] % bs;
303: }
304: } else col = in[j];
305: if (roworiented) value = v[i * n + j];
306: else value = v[i + j * m];
307: MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
308: /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
309: }
310: }
311: } else {
312: PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
313: if (!baij->donotstash) {
314: mat->assembled = PETSC_FALSE;
315: if (roworiented) {
316: PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317: } else {
318: PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
319: }
320: }
321: }
322: }
323: PetscFunctionReturn(PETSC_SUCCESS);
324: }
326: static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327: {
328: Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
329: PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330: PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen;
331: PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332: PetscBool roworiented = a->roworiented;
333: const PetscScalar *value = v;
334: MatScalar *ap, *aa = a->a, *bap;
336: PetscFunctionBegin;
337: rp = aj + ai[row];
338: ap = aa + bs2 * ai[row];
339: rmax = imax[row];
340: nrow = ailen[row];
341: value = v;
342: low = 0;
343: high = nrow;
344: while (high - low > 7) {
345: t = (low + high) / 2;
346: if (rp[t] > col) high = t;
347: else low = t;
348: }
349: for (i = low; i < high; i++) {
350: if (rp[i] > col) break;
351: if (rp[i] == col) {
352: bap = ap + bs2 * i;
353: if (roworiented) {
354: if (is == ADD_VALUES) {
355: for (ii = 0; ii < bs; ii++) {
356: for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357: }
358: } else {
359: for (ii = 0; ii < bs; ii++) {
360: for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361: }
362: }
363: } else {
364: if (is == ADD_VALUES) {
365: for (ii = 0; ii < bs; ii++, value += bs) {
366: for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367: bap += bs;
368: }
369: } else {
370: for (ii = 0; ii < bs; ii++, value += bs) {
371: for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372: bap += bs;
373: }
374: }
375: }
376: goto noinsert2;
377: }
378: }
379: if (nonew == 1) goto noinsert2;
380: PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381: MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
382: N = nrow++ - 1;
383: high++;
384: /* shift up all the later entries in this row */
385: PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
386: PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387: rp[i] = col;
388: bap = ap + bs2 * i;
389: if (roworiented) {
390: for (ii = 0; ii < bs; ii++) {
391: for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392: }
393: } else {
394: for (ii = 0; ii < bs; ii++) {
395: for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396: }
397: }
398: noinsert2:;
399: ailen[row] = nrow;
400: PetscFunctionReturn(PETSC_SUCCESS);
401: }
403: /*
404: This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
405: by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
406: */
407: static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408: {
409: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
410: const PetscScalar *value;
411: MatScalar *barray = baij->barray;
412: PetscBool roworiented = baij->roworiented;
413: PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs;
414: PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415: PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
417: PetscFunctionBegin;
418: if (!barray) {
419: PetscCall(PetscMalloc1(bs2, &barray));
420: baij->barray = barray;
421: }
423: if (roworiented) stepval = (n - 1) * bs;
424: else stepval = (m - 1) * bs;
426: for (i = 0; i < m; i++) {
427: if (im[i] < 0) continue;
428: PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429: if (im[i] >= rstart && im[i] < rend) {
430: row = im[i] - rstart;
431: for (j = 0; j < n; j++) {
432: /* If NumCol = 1 then a copy is not required */
433: if ((roworiented) && (n == 1)) {
434: barray = (MatScalar *)v + i * bs2;
435: } else if ((!roworiented) && (m == 1)) {
436: barray = (MatScalar *)v + j * bs2;
437: } else { /* Here a copy is required */
438: if (roworiented) {
439: value = v + (i * (stepval + bs) + j) * bs;
440: } else {
441: value = v + (j * (stepval + bs) + i) * bs;
442: }
443: for (ii = 0; ii < bs; ii++, value += bs + stepval) {
444: for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
445: barray += bs;
446: }
447: barray -= bs2;
448: }
450: if (in[j] >= cstart && in[j] < cend) {
451: col = in[j] - cstart;
452: PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453: } else if (in[j] < 0) {
454: continue;
455: } else {
456: PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457: if (mat->was_assembled) {
458: if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
460: #if defined(PETSC_USE_CTABLE)
461: PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462: col = col < 1 ? -1 : (col - 1) / bs;
463: #else
464: col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
465: #endif
466: if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
467: PetscCall(MatDisAssemble_MPIBAIJ(mat));
468: col = in[j];
469: } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470: } else col = in[j];
471: PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472: }
473: }
474: } else {
475: PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476: if (!baij->donotstash) {
477: if (roworiented) {
478: PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479: } else {
480: PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481: }
482: }
483: }
484: }
485: PetscFunctionReturn(PETSC_SUCCESS);
486: }
488: #define HASH_KEY 0.6180339887
489: #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490: /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491: /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
492: static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493: {
494: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
495: PetscBool roworiented = baij->roworiented;
496: PetscInt i, j, row, col;
497: PetscInt rstart_orig = mat->rmap->rstart;
498: PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499: PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500: PetscReal tmp;
501: MatScalar **HD = baij->hd, value;
502: PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
504: PetscFunctionBegin;
505: for (i = 0; i < m; i++) {
506: if (PetscDefined(USE_DEBUG)) {
507: PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
508: PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
509: }
510: row = im[i];
511: if (row >= rstart_orig && row < rend_orig) {
512: for (j = 0; j < n; j++) {
513: col = in[j];
514: if (roworiented) value = v[i * n + j];
515: else value = v[i + j * m];
516: /* Look up PetscInto the Hash Table */
517: key = (row / bs) * Nbs + (col / bs) + 1;
518: h1 = HASH(size, key, tmp);
520: idx = h1;
521: if (PetscDefined(USE_DEBUG)) {
522: insert_ct++;
523: total_ct++;
524: if (HT[idx] != key) {
525: for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526: if (idx == size) {
527: for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
528: PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529: }
530: }
531: } else if (HT[idx] != key) {
532: for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533: if (idx == size) {
534: for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
535: PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536: }
537: }
538: /* A HASH table entry is found, so insert the values at the correct address */
539: if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540: else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
541: }
542: } else if (!baij->donotstash) {
543: if (roworiented) {
544: PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545: } else {
546: PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
547: }
548: }
549: }
550: if (PetscDefined(USE_DEBUG)) {
551: baij->ht_total_ct += total_ct;
552: baij->ht_insert_ct += insert_ct;
553: }
554: PetscFunctionReturn(PETSC_SUCCESS);
555: }
557: static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558: {
559: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
560: PetscBool roworiented = baij->roworiented;
561: PetscInt i, j, ii, jj, row, col;
562: PetscInt rstart = baij->rstartbs;
563: PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564: PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565: PetscReal tmp;
566: MatScalar **HD = baij->hd, *baij_a;
567: const PetscScalar *v_t, *value;
568: PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
570: PetscFunctionBegin;
571: if (roworiented) stepval = (n - 1) * bs;
572: else stepval = (m - 1) * bs;
574: for (i = 0; i < m; i++) {
575: if (PetscDefined(USE_DEBUG)) {
576: PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
577: PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
578: }
579: row = im[i];
580: v_t = v + i * nbs2;
581: if (row >= rstart && row < rend) {
582: for (j = 0; j < n; j++) {
583: col = in[j];
585: /* Look up into the Hash Table */
586: key = row * Nbs + col + 1;
587: h1 = HASH(size, key, tmp);
589: idx = h1;
590: if (PetscDefined(USE_DEBUG)) {
591: total_ct++;
592: insert_ct++;
593: if (HT[idx] != key) {
594: for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595: if (idx == size) {
596: for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
597: PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598: }
599: }
600: } else if (HT[idx] != key) {
601: for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602: if (idx == size) {
603: for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
604: PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605: }
606: }
607: baij_a = HD[idx];
608: if (roworiented) {
609: /*value = v + i*(stepval+bs)*bs + j*bs;*/
610: /* value = v + (i*(stepval+bs)+j)*bs; */
611: value = v_t;
612: v_t += bs;
613: if (addv == ADD_VALUES) {
614: for (ii = 0; ii < bs; ii++, value += stepval) {
615: for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616: }
617: } else {
618: for (ii = 0; ii < bs; ii++, value += stepval) {
619: for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620: }
621: }
622: } else {
623: value = v + j * (stepval + bs) * bs + i * bs;
624: if (addv == ADD_VALUES) {
625: for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626: for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627: }
628: } else {
629: for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630: for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631: }
632: }
633: }
634: }
635: } else {
636: if (!baij->donotstash) {
637: if (roworiented) {
638: PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
639: } else {
640: PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
641: }
642: }
643: }
644: }
645: if (PetscDefined(USE_DEBUG)) {
646: baij->ht_total_ct += total_ct;
647: baij->ht_insert_ct += insert_ct;
648: }
649: PetscFunctionReturn(PETSC_SUCCESS);
650: }
652: static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653: {
654: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655: PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656: PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
658: PetscFunctionBegin;
659: for (i = 0; i < m; i++) {
660: if (idxm[i] < 0) continue; /* negative row */
661: PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662: PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
663: row = idxm[i] - bsrstart;
664: for (j = 0; j < n; j++) {
665: if (idxn[j] < 0) continue; /* negative column */
666: PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667: if (idxn[j] >= bscstart && idxn[j] < bscend) {
668: col = idxn[j] - bscstart;
669: PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670: } else {
671: if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672: #if defined(PETSC_USE_CTABLE)
673: PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674: data--;
675: #else
676: data = baij->colmap[idxn[j] / bs] - 1;
677: #endif
678: if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
679: else {
680: col = data + idxn[j] % bs;
681: PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682: }
683: }
684: }
685: }
686: PetscFunctionReturn(PETSC_SUCCESS);
687: }
689: static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
690: {
691: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
692: Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
693: PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
694: PetscReal sum = 0.0;
695: MatScalar *v;
697: PetscFunctionBegin;
698: if (baij->size == 1) {
699: PetscCall(MatNorm(baij->A, type, nrm));
700: } else {
701: if (type == NORM_FROBENIUS) {
702: v = amat->a;
703: nz = amat->nz * bs2;
704: for (i = 0; i < nz; i++) {
705: sum += PetscRealPart(PetscConj(*v) * (*v));
706: v++;
707: }
708: v = bmat->a;
709: nz = bmat->nz * bs2;
710: for (i = 0; i < nz; i++) {
711: sum += PetscRealPart(PetscConj(*v) * (*v));
712: v++;
713: }
714: PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
715: *nrm = PetscSqrtReal(*nrm);
716: } else if (type == NORM_1) { /* max column sum */
717: Vec col, bcol;
718: PetscScalar *array;
719: PetscInt *jj, *garray = baij->garray;
721: PetscCall(MatCreateVecs(mat, &col, NULL));
722: PetscCall(VecGetArrayWrite(col, &array));
723: v = amat->a;
724: jj = amat->j;
725: for (i = 0; i < amat->nz; i++) {
726: for (j = 0; j < bs; j++) {
727: PetscInt col = bs * *jj + j; /* column index */
729: for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++);
730: }
731: jj++;
732: }
733: PetscCall(VecRestoreArrayWrite(col, &array));
734: PetscCall(MatCreateVecs(baij->B, &bcol, NULL));
735: PetscCall(VecGetArrayWrite(bcol, &array));
736: v = bmat->a;
737: jj = bmat->j;
738: for (i = 0; i < bmat->nz; i++) {
739: for (j = 0; j < bs; j++) {
740: PetscInt col = bs * *jj + j; /* column index */
742: for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++);
743: }
744: jj++;
745: }
746: PetscCall(VecSetValuesBlocked(col, bmat->nbs, garray, array, ADD_VALUES));
747: PetscCall(VecRestoreArrayWrite(bcol, &array));
748: PetscCall(VecDestroy(&bcol));
749: PetscCall(VecAssemblyBegin(col));
750: PetscCall(VecAssemblyEnd(col));
751: PetscCall(VecNorm(col, NORM_INFINITY, nrm));
752: PetscCall(VecDestroy(&col));
753: } else if (type == NORM_INFINITY) { /* max row sum */
754: PetscReal *sums;
755: PetscCall(PetscMalloc1(bs, &sums));
756: sum = 0.0;
757: for (j = 0; j < amat->mbs; j++) {
758: for (row = 0; row < bs; row++) sums[row] = 0.0;
759: v = amat->a + bs2 * amat->i[j];
760: nz = amat->i[j + 1] - amat->i[j];
761: for (i = 0; i < nz; i++) {
762: for (col = 0; col < bs; col++) {
763: for (row = 0; row < bs; row++) {
764: sums[row] += PetscAbsScalar(*v);
765: v++;
766: }
767: }
768: }
769: v = bmat->a + bs2 * bmat->i[j];
770: nz = bmat->i[j + 1] - bmat->i[j];
771: for (i = 0; i < nz; i++) {
772: for (col = 0; col < bs; col++) {
773: for (row = 0; row < bs; row++) {
774: sums[row] += PetscAbsScalar(*v);
775: v++;
776: }
777: }
778: }
779: for (row = 0; row < bs; row++) {
780: if (sums[row] > sum) sum = sums[row];
781: }
782: }
783: PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
784: PetscCall(PetscFree(sums));
785: } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
786: }
787: PetscFunctionReturn(PETSC_SUCCESS);
788: }
790: /*
791: Creates the hash table, and sets the table
792: This table is created only once.
793: If new entries need to be added to the matrix
794: then the hash table has to be destroyed and
795: recreated.
796: */
797: static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
798: {
799: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
800: Mat A = baij->A, B = baij->B;
801: Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
802: PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
803: PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
804: PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
805: PetscInt *HT, key;
806: MatScalar **HD;
807: PetscReal tmp;
808: #if defined(PETSC_USE_INFO)
809: PetscInt ct = 0, max = 0;
810: #endif
812: PetscFunctionBegin;
813: if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
815: baij->ht_size = (PetscInt)(factor * nz);
816: ht_size = baij->ht_size;
818: /* Allocate Memory for Hash Table */
819: PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
820: HD = baij->hd;
821: HT = baij->ht;
823: /* Loop Over A */
824: for (i = 0; i < a->mbs; i++) {
825: for (j = ai[i]; j < ai[i + 1]; j++) {
826: row = i + rstart;
827: col = aj[j] + cstart;
829: key = row * Nbs + col + 1;
830: h1 = HASH(ht_size, key, tmp);
831: for (k = 0; k < ht_size; k++) {
832: if (!HT[(h1 + k) % ht_size]) {
833: HT[(h1 + k) % ht_size] = key;
834: HD[(h1 + k) % ht_size] = a->a + j * bs2;
835: break;
836: #if defined(PETSC_USE_INFO)
837: } else {
838: ct++;
839: #endif
840: }
841: }
842: #if defined(PETSC_USE_INFO)
843: if (k > max) max = k;
844: #endif
845: }
846: }
847: /* Loop Over B */
848: for (i = 0; i < b->mbs; i++) {
849: for (j = bi[i]; j < bi[i + 1]; j++) {
850: row = i + rstart;
851: col = garray[bj[j]];
852: key = row * Nbs + col + 1;
853: h1 = HASH(ht_size, key, tmp);
854: for (k = 0; k < ht_size; k++) {
855: if (!HT[(h1 + k) % ht_size]) {
856: HT[(h1 + k) % ht_size] = key;
857: HD[(h1 + k) % ht_size] = b->a + j * bs2;
858: break;
859: #if defined(PETSC_USE_INFO)
860: } else {
861: ct++;
862: #endif
863: }
864: }
865: #if defined(PETSC_USE_INFO)
866: if (k > max) max = k;
867: #endif
868: }
869: }
871: /* Print Summary */
872: #if defined(PETSC_USE_INFO)
873: for (i = 0, j = 0; i < ht_size; i++) {
874: if (HT[i]) j++;
875: }
876: PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max));
877: #endif
878: PetscFunctionReturn(PETSC_SUCCESS);
879: }
881: static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
882: {
883: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
884: PetscInt nstash, reallocs;
886: PetscFunctionBegin;
887: if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
889: PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
890: PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
891: PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
892: PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
893: PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
894: PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
895: PetscFunctionReturn(PETSC_SUCCESS);
896: }
898: static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
899: {
900: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
901: Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data;
902: PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2;
903: PetscInt *row, *col;
904: PetscBool r1, r2, r3, all_assembled;
905: MatScalar *val;
906: PetscMPIInt n;
908: PetscFunctionBegin;
909: /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
910: if (!baij->donotstash && !mat->nooffprocentries) {
911: while (1) {
912: PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
913: if (!flg) break;
915: for (i = 0; i < n;) {
916: /* Now identify the consecutive vals belonging to the same row */
917: for (j = i, rstart = row[j]; j < n; j++) {
918: if (row[j] != rstart) break;
919: }
920: if (j < n) ncols = j - i;
921: else ncols = n - i;
922: /* Now assemble all these values with a single function call */
923: PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
924: i = j;
925: }
926: }
927: PetscCall(MatStashScatterEnd_Private(&mat->stash));
928: /* Now process the block-stash. Since the values are stashed column-oriented,
929: set the row-oriented flag to column-oriented, and after MatSetValues()
930: restore the original flags */
931: r1 = baij->roworiented;
932: r2 = a->roworiented;
933: r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
935: baij->roworiented = PETSC_FALSE;
936: a->roworiented = PETSC_FALSE;
937: ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
938: while (1) {
939: PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
940: if (!flg) break;
942: for (i = 0; i < n;) {
943: /* Now identify the consecutive vals belonging to the same row */
944: for (j = i, rstart = row[j]; j < n; j++) {
945: if (row[j] != rstart) break;
946: }
947: if (j < n) ncols = j - i;
948: else ncols = n - i;
949: PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
950: i = j;
951: }
952: }
953: PetscCall(MatStashScatterEnd_Private(&mat->bstash));
955: baij->roworiented = r1;
956: a->roworiented = r2;
957: ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
958: }
960: PetscCall(MatAssemblyBegin(baij->A, mode));
961: PetscCall(MatAssemblyEnd(baij->A, mode));
963: /* determine if any process has disassembled, if so we must
964: also disassemble ourselves, in order that we may reassemble. */
965: /*
966: if nonzero structure of submatrix B cannot change then we know that
967: no process disassembled thus we can skip this stuff
968: */
969: if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
970: PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
971: if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
972: }
974: if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
975: PetscCall(MatAssemblyBegin(baij->B, mode));
976: PetscCall(MatAssemblyEnd(baij->B, mode));
978: #if defined(PETSC_USE_INFO)
979: if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
980: PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
982: baij->ht_total_ct = 0;
983: baij->ht_insert_ct = 0;
984: }
985: #endif
986: if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
987: PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
989: mat->ops->setvalues = MatSetValues_MPIBAIJ_HT;
990: mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
991: }
993: PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
995: baij->rowvalues = NULL;
997: /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
998: if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
999: PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
1000: PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1001: }
1002: PetscFunctionReturn(PETSC_SUCCESS);
1003: }
1005: #include <petscdraw.h>
1006: static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1007: {
1008: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1009: PetscMPIInt rank = baij->rank;
1010: PetscInt bs = mat->rmap->bs;
1011: PetscBool isascii, isdraw;
1012: PetscViewer sviewer;
1013: PetscViewerFormat format;
1015: PetscFunctionBegin;
1016: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
1017: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
1018: if (isascii) {
1019: PetscCall(PetscViewerGetFormat(viewer, &format));
1020: if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
1021: MatInfo info;
1022: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1023: PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
1024: PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1025: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1026: mat->rmap->bs, info.memory));
1027: PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
1028: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
1029: PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
1030: PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
1031: PetscCall(PetscViewerFlush(viewer));
1032: PetscCall(PetscViewerASCIIPopSynchronized(viewer));
1033: PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
1034: PetscCall(VecScatterView(baij->Mvctx, viewer));
1035: PetscFunctionReturn(PETSC_SUCCESS);
1036: } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_FACTOR_INFO) PetscFunctionReturn(PETSC_SUCCESS);
1037: }
1039: if (isdraw) {
1040: PetscDraw draw;
1041: PetscBool isnull;
1042: PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
1043: PetscCall(PetscDrawIsNull(draw, &isnull));
1044: if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1045: }
1047: {
1048: /* assemble the entire matrix onto first processor. */
1049: Mat A;
1050: Mat_SeqBAIJ *Aloc;
1051: PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
1052: MatScalar *a;
1053: const char *matname;
1055: /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1056: /* Perhaps this should be the type of mat? */
1057: PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1058: if (rank == 0) {
1059: PetscCall(MatSetSizes(A, M, N, M, N));
1060: } else {
1061: PetscCall(MatSetSizes(A, 0, 0, M, N));
1062: }
1063: PetscCall(MatSetType(A, MATMPIBAIJ));
1064: PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
1065: PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
1067: /* copy over the A part */
1068: Aloc = (Mat_SeqBAIJ *)baij->A->data;
1069: ai = Aloc->i;
1070: aj = Aloc->j;
1071: a = Aloc->a;
1072: PetscCall(PetscMalloc1(bs, &rvals));
1074: for (i = 0; i < mbs; i++) {
1075: rvals[0] = bs * (baij->rstartbs + i);
1076: for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
1077: for (j = ai[i]; j < ai[i + 1]; j++) {
1078: col = (baij->cstartbs + aj[j]) * bs;
1079: for (k = 0; k < bs; k++) {
1080: PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
1081: col++;
1082: a += bs;
1083: }
1084: }
1085: }
1086: /* copy over the B part */
1087: Aloc = (Mat_SeqBAIJ *)baij->B->data;
1088: ai = Aloc->i;
1089: aj = Aloc->j;
1090: a = Aloc->a;
1091: for (i = 0; i < mbs; i++) {
1092: rvals[0] = bs * (baij->rstartbs + i);
1093: for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
1094: for (j = ai[i]; j < ai[i + 1]; j++) {
1095: col = baij->garray[aj[j]] * bs;
1096: for (k = 0; k < bs; k++) {
1097: PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
1098: col++;
1099: a += bs;
1100: }
1101: }
1102: }
1103: PetscCall(PetscFree(rvals));
1104: PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
1105: PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1106: /*
1107: Everyone has to call to draw the matrix since the graphics waits are
1108: synchronized across all processors that share the PetscDraw object
1109: */
1110: PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1111: if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1112: if (rank == 0) {
1113: if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1114: PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
1115: }
1116: PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1117: PetscCall(MatDestroy(&A));
1118: }
1119: PetscFunctionReturn(PETSC_SUCCESS);
1120: }
1122: /* Used for both MPIBAIJ and MPISBAIJ matrices */
1123: PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1124: {
1125: Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1126: Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data;
1127: Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data;
1128: const PetscInt *garray = aij->garray;
1129: PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
1130: PetscCount nz, hnz;
1131: PetscInt *rowlens, *colidxs;
1132: PetscScalar *matvals;
1133: PetscMPIInt rank;
1135: PetscFunctionBegin;
1136: PetscCall(PetscViewerSetUp(viewer));
1138: M = mat->rmap->N;
1139: N = mat->cmap->N;
1140: m = mat->rmap->n;
1141: rs = mat->rmap->rstart;
1142: cs = mat->cmap->rstart;
1143: bs = mat->rmap->bs;
1144: nz = bs * bs * (A->nz + B->nz);
1146: /* write matrix header */
1147: header[0] = MAT_FILE_CLASSID;
1148: header[1] = M;
1149: header[2] = N;
1150: PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
1151: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1152: if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
1153: PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1155: /* fill in and store row lengths */
1156: PetscCall(PetscMalloc1(m, &rowlens));
1157: for (cnt = 0, i = 0; i < A->mbs; i++)
1158: for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
1159: PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
1160: PetscCall(PetscFree(rowlens));
1162: /* fill in and store column indices */
1163: PetscCall(PetscMalloc1(nz, &colidxs));
1164: for (cnt = 0, i = 0; i < A->mbs; i++) {
1165: for (k = 0; k < bs; k++) {
1166: for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1167: if (garray[B->j[jb]] > cs / bs) break;
1168: for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1169: }
1170: for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
1171: for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1172: for (; jb < B->i[i + 1]; jb++)
1173: for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1174: }
1175: }
1176: PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
1177: PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
1178: PetscCall(PetscFree(colidxs));
1180: /* fill in and store nonzero values */
1181: PetscCall(PetscMalloc1(nz, &matvals));
1182: for (cnt = 0, i = 0; i < A->mbs; i++) {
1183: for (k = 0; k < bs; k++) {
1184: for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1185: if (garray[B->j[jb]] > cs / bs) break;
1186: for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1187: }
1188: for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
1189: for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1190: for (; jb < B->i[i + 1]; jb++)
1191: for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1192: }
1193: }
1194: PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
1195: PetscCall(PetscFree(matvals));
1197: /* write block size option to the viewer's .info file */
1198: PetscCall(MatView_Binary_BlockSizes(mat, viewer));
1199: PetscFunctionReturn(PETSC_SUCCESS);
1200: }
1202: PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1203: {
1204: PetscBool isascii, isdraw, issocket, isbinary;
1206: PetscFunctionBegin;
1207: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
1208: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
1209: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
1210: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1211: if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
1212: else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
1213: PetscFunctionReturn(PETSC_SUCCESS);
1214: }
1216: static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1217: {
1218: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1219: PetscInt nt;
1221: PetscFunctionBegin;
1222: PetscCall(VecGetLocalSize(xx, &nt));
1223: PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
1224: PetscCall(VecGetLocalSize(yy, &nt));
1225: PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
1226: PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1227: PetscUseTypeMethod(a->A, mult, xx, yy);
1228: PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1229: PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
1230: PetscFunctionReturn(PETSC_SUCCESS);
1231: }
1233: static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1234: {
1235: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1237: PetscFunctionBegin;
1238: PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1239: PetscUseTypeMethod(a->A, multadd, xx, yy, zz);
1240: PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1241: PetscUseTypeMethod(a->B, multadd, a->lvec, zz, zz);
1242: PetscFunctionReturn(PETSC_SUCCESS);
1243: }
1245: static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1246: {
1247: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1249: PetscFunctionBegin;
1250: /* do nondiagonal part */
1251: PetscUseTypeMethod(a->B, multtranspose, xx, a->lvec);
1252: /* do local part */
1253: PetscUseTypeMethod(a->A, multtranspose, xx, yy);
1254: /* add partial results together */
1255: PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
1256: PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
1257: PetscFunctionReturn(PETSC_SUCCESS);
1258: }
1260: static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1261: {
1262: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1264: PetscFunctionBegin;
1265: /* do nondiagonal part */
1266: PetscUseTypeMethod(a->B, multtranspose, xx, a->lvec);
1267: /* do local part */
1268: PetscUseTypeMethod(a->A, multtransposeadd, xx, yy, zz);
1269: /* add partial results together */
1270: PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
1271: PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
1272: PetscFunctionReturn(PETSC_SUCCESS);
1273: }
1275: /*
1276: This only works correctly for square matrices where the subblock A->A is the
1277: diagonal block
1278: */
1279: static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1280: {
1281: PetscFunctionBegin;
1282: PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1283: PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
1284: PetscFunctionReturn(PETSC_SUCCESS);
1285: }
1287: static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1288: {
1289: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1291: PetscFunctionBegin;
1292: PetscCall(MatScale(a->A, aa));
1293: PetscCall(MatScale(a->B, aa));
1294: PetscFunctionReturn(PETSC_SUCCESS);
1295: }
1297: static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1298: {
1299: Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
1300: PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1301: PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1302: PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1303: PetscInt *cmap, *idx_p, cstart = mat->cstartbs;
1305: PetscFunctionBegin;
1306: PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1307: PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1308: mat->getrowactive = PETSC_TRUE;
1310: if (!mat->rowvalues && (idx || v)) {
1311: /*
1312: allocate enough space to hold information from the longest row.
1313: */
1314: Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1315: PetscInt max = 1, mbs = mat->mbs, tmp;
1316: for (i = 0; i < mbs; i++) {
1317: tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
1318: if (max < tmp) max = tmp;
1319: }
1320: PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1321: }
1322: lrow = row - brstart;
1324: pvA = &vworkA;
1325: pcA = &cworkA;
1326: pvB = &vworkB;
1327: pcB = &cworkB;
1328: if (!v) {
1329: pvA = NULL;
1330: pvB = NULL;
1331: }
1332: if (!idx) {
1333: pcA = NULL;
1334: if (!v) pcB = NULL;
1335: }
1336: PetscUseTypeMethod(mat->A, getrow, lrow, &nzA, pcA, pvA);
1337: PetscUseTypeMethod(mat->B, getrow, lrow, &nzB, pcB, pvB);
1338: nztot = nzA + nzB;
1340: cmap = mat->garray;
1341: if (v || idx) {
1342: if (nztot) {
1343: /* Sort by increasing column numbers, assuming A and B already sorted */
1344: PetscInt imark = -1;
1345: if (v) {
1346: *v = v_p = mat->rowvalues;
1347: for (i = 0; i < nzB; i++) {
1348: if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1349: else break;
1350: }
1351: imark = i;
1352: for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1353: for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1354: }
1355: if (idx) {
1356: *idx = idx_p = mat->rowindices;
1357: if (imark > -1) {
1358: for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1359: } else {
1360: for (i = 0; i < nzB; i++) {
1361: if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1362: else break;
1363: }
1364: imark = i;
1365: }
1366: for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1367: for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1368: }
1369: } else {
1370: if (idx) *idx = NULL;
1371: if (v) *v = NULL;
1372: }
1373: }
1374: *nz = nztot;
1375: PetscUseTypeMethod(mat->A, restorerow, lrow, &nzA, pcA, pvA);
1376: PetscUseTypeMethod(mat->B, restorerow, lrow, &nzB, pcB, pvB);
1377: PetscFunctionReturn(PETSC_SUCCESS);
1378: }
1380: static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1381: {
1382: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1384: PetscFunctionBegin;
1385: PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1386: baij->getrowactive = PETSC_FALSE;
1387: PetscFunctionReturn(PETSC_SUCCESS);
1388: }
1390: static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1391: {
1392: Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1394: PetscFunctionBegin;
1395: PetscCall(MatZeroEntries(l->A));
1396: PetscCall(MatZeroEntries(l->B));
1397: PetscFunctionReturn(PETSC_SUCCESS);
1398: }
1400: static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1401: {
1402: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data;
1403: Mat A = a->A, B = a->B;
1404: PetscLogDouble isend[5], irecv[5];
1406: PetscFunctionBegin;
1407: info->block_size = (PetscReal)matin->rmap->bs;
1409: PetscCall(MatGetInfo(A, MAT_LOCAL, info));
1411: isend[0] = info->nz_used;
1412: isend[1] = info->nz_allocated;
1413: isend[2] = info->nz_unneeded;
1414: isend[3] = info->memory;
1415: isend[4] = info->mallocs;
1417: PetscCall(MatGetInfo(B, MAT_LOCAL, info));
1419: isend[0] += info->nz_used;
1420: isend[1] += info->nz_allocated;
1421: isend[2] += info->nz_unneeded;
1422: isend[3] += info->memory;
1423: isend[4] += info->mallocs;
1425: if (flag == MAT_LOCAL) {
1426: info->nz_used = isend[0];
1427: info->nz_allocated = isend[1];
1428: info->nz_unneeded = isend[2];
1429: info->memory = isend[3];
1430: info->mallocs = isend[4];
1431: } else if (flag == MAT_GLOBAL_MAX) {
1432: PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
1434: info->nz_used = irecv[0];
1435: info->nz_allocated = irecv[1];
1436: info->nz_unneeded = irecv[2];
1437: info->memory = irecv[3];
1438: info->mallocs = irecv[4];
1439: } else if (flag == MAT_GLOBAL_SUM) {
1440: PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
1442: info->nz_used = irecv[0];
1443: info->nz_allocated = irecv[1];
1444: info->nz_unneeded = irecv[2];
1445: info->memory = irecv[3];
1446: info->mallocs = irecv[4];
1447: } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1448: info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */
1449: info->fill_ratio_needed = 0;
1450: info->factor_mallocs = 0;
1451: PetscFunctionReturn(PETSC_SUCCESS);
1452: }
1454: static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1455: {
1456: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1458: PetscFunctionBegin;
1459: switch (op) {
1460: case MAT_NEW_NONZERO_LOCATIONS:
1461: case MAT_NEW_NONZERO_ALLOCATION_ERR:
1462: case MAT_UNUSED_NONZERO_LOCATION_ERR:
1463: case MAT_KEEP_NONZERO_PATTERN:
1464: case MAT_NEW_NONZERO_LOCATION_ERR:
1465: MatCheckPreallocated(A, 1);
1466: PetscCall(MatSetOption(a->A, op, flg));
1467: PetscCall(MatSetOption(a->B, op, flg));
1468: break;
1469: case MAT_ROW_ORIENTED:
1470: MatCheckPreallocated(A, 1);
1471: a->roworiented = flg;
1473: PetscCall(MatSetOption(a->A, op, flg));
1474: PetscCall(MatSetOption(a->B, op, flg));
1475: break;
1476: case MAT_IGNORE_OFF_PROC_ENTRIES:
1477: a->donotstash = flg;
1478: break;
1479: case MAT_USE_HASH_TABLE:
1480: a->ht_flag = flg;
1481: a->ht_fact = 1.39;
1482: break;
1483: case MAT_SYMMETRIC:
1484: case MAT_STRUCTURALLY_SYMMETRIC:
1485: case MAT_HERMITIAN:
1486: case MAT_SYMMETRY_ETERNAL:
1487: case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1488: case MAT_SPD_ETERNAL:
1489: /* if the diagonal matrix is square it inherits some of the properties above */
1490: if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1491: break;
1492: default:
1493: break;
1494: }
1495: PetscFunctionReturn(PETSC_SUCCESS);
1496: }
1498: static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1499: {
1500: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
1501: Mat_SeqBAIJ *Aloc;
1502: Mat B;
1503: PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1504: PetscInt bs = A->rmap->bs, mbs = baij->mbs;
1505: MatScalar *a;
1507: PetscFunctionBegin;
1508: if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1509: if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
1510: PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1511: PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
1512: PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
1513: /* Do not know preallocation information, but must set block size */
1514: PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1515: } else {
1516: B = *matout;
1517: }
1519: /* copy over the A part */
1520: Aloc = (Mat_SeqBAIJ *)baij->A->data;
1521: ai = Aloc->i;
1522: aj = Aloc->j;
1523: a = Aloc->a;
1524: PetscCall(PetscMalloc1(bs, &rvals));
1526: for (i = 0; i < mbs; i++) {
1527: rvals[0] = bs * (baij->rstartbs + i);
1528: for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
1529: for (j = ai[i]; j < ai[i + 1]; j++) {
1530: col = (baij->cstartbs + aj[j]) * bs;
1531: for (k = 0; k < bs; k++) {
1532: PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
1534: col++;
1535: a += bs;
1536: }
1537: }
1538: }
1539: /* copy over the B part */
1540: Aloc = (Mat_SeqBAIJ *)baij->B->data;
1541: ai = Aloc->i;
1542: aj = Aloc->j;
1543: a = Aloc->a;
1544: for (i = 0; i < mbs; i++) {
1545: rvals[0] = bs * (baij->rstartbs + i);
1546: for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
1547: for (j = ai[i]; j < ai[i + 1]; j++) {
1548: col = baij->garray[aj[j]] * bs;
1549: for (k = 0; k < bs; k++) {
1550: PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
1551: col++;
1552: a += bs;
1553: }
1554: }
1555: }
1556: PetscCall(PetscFree(rvals));
1557: PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1558: PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1560: if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
1561: else PetscCall(MatHeaderMerge(A, &B));
1562: PetscFunctionReturn(PETSC_SUCCESS);
1563: }
1565: static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1566: {
1567: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1568: Mat a = baij->A, b = baij->B;
1569: PetscInt s1, s2, s3;
1571: PetscFunctionBegin;
1572: PetscCall(MatGetLocalSize(mat, &s2, &s3));
1573: if (rr) {
1574: PetscCall(VecGetLocalSize(rr, &s1));
1575: PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
1576: /* Overlap communication with computation. */
1577: PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1578: }
1579: if (ll) {
1580: PetscCall(VecGetLocalSize(ll, &s1));
1581: PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1582: PetscUseTypeMethod(b, diagonalscale, ll, NULL);
1583: }
1584: /* scale the diagonal block */
1585: PetscUseTypeMethod(a, diagonalscale, ll, rr);
1587: if (rr) {
1588: /* Do a scatter end and then right scale the off-diagonal block */
1589: PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1590: PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
1591: }
1592: PetscFunctionReturn(PETSC_SUCCESS);
1593: }
1595: static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1596: {
1597: Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1598: PetscInt *lrows;
1599: PetscInt r, len;
1600: PetscBool cong;
1602: PetscFunctionBegin;
1603: /* get locally owned rows */
1604: PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1605: /* fix right-hand side if needed */
1606: if (x && b) {
1607: const PetscScalar *xx;
1608: PetscScalar *bb;
1610: PetscCall(VecGetArrayRead(x, &xx));
1611: PetscCall(VecGetArray(b, &bb));
1612: for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
1613: PetscCall(VecRestoreArrayRead(x, &xx));
1614: PetscCall(VecRestoreArray(b, &bb));
1615: }
1617: /* actually zap the local rows */
1618: /*
1619: Zero the required rows. If the "diagonal block" of the matrix
1620: is square and the user wishes to set the diagonal we use separate
1621: code so that MatSetValues() is not called for each diagonal allocating
1622: new memory, thus calling lots of mallocs and slowing things down.
1624: */
1625: /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1626: PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
1627: PetscCall(MatHasCongruentLayouts(A, &cong));
1628: if ((diag != 0.0) && cong) {
1629: PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1630: } else if (diag != 0.0) {
1631: PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1632: PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
1633: for (r = 0; r < len; ++r) {
1634: const PetscInt row = lrows[r] + A->rmap->rstart;
1635: PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1636: }
1637: PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
1638: PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1639: } else {
1640: PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1641: }
1642: PetscCall(PetscFree(lrows));
1644: /* only change matrix nonzero state if pattern was allowed to be changed */
1645: if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1646: PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1647: PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1648: }
1649: PetscFunctionReturn(PETSC_SUCCESS);
1650: }
1652: static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1653: {
1654: Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1655: PetscMPIInt n, p = 0;
1656: PetscInt i, j, k, r, len = 0, row, col, count;
1657: PetscInt *lrows, *owners = A->rmap->range;
1658: PetscSFNode *rrows;
1659: PetscSF sf;
1660: const PetscScalar *xx;
1661: PetscScalar *bb, *mask;
1662: Vec xmask, lmask;
1663: Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data;
1664: PetscInt bs = A->rmap->bs, bs2 = baij->bs2;
1665: PetscScalar *aa;
1667: PetscFunctionBegin;
1668: PetscCall(PetscMPIIntCast(A->rmap->n, &n));
1669: /* create PetscSF where leaves are input rows and roots are owned rows */
1670: PetscCall(PetscMalloc1(n, &lrows));
1671: for (r = 0; r < n; ++r) lrows[r] = -1;
1672: PetscCall(PetscMalloc1(N, &rrows));
1673: for (r = 0; r < N; ++r) {
1674: const PetscInt idx = rows[r];
1675: PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
1676: if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
1677: PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
1678: }
1679: rrows[r].rank = p;
1680: rrows[r].index = rows[r] - owners[p];
1681: }
1682: PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
1683: PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
1684: /* collect flags for rows to be zeroed */
1685: PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
1686: PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
1687: PetscCall(PetscSFDestroy(&sf));
1688: /* compress and put in row numbers */
1689: for (r = 0; r < n; ++r)
1690: if (lrows[r] >= 0) lrows[len++] = r;
1691: /* zero diagonal part of matrix */
1692: PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
1693: /* handle off-diagonal part of matrix */
1694: PetscCall(MatCreateVecs(A, &xmask, NULL));
1695: PetscCall(VecDuplicate(l->lvec, &lmask));
1696: PetscCall(VecGetArray(xmask, &bb));
1697: for (i = 0; i < len; i++) bb[lrows[i]] = 1;
1698: PetscCall(VecRestoreArray(xmask, &bb));
1699: PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
1700: PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
1701: PetscCall(VecDestroy(&xmask));
1702: if (x) {
1703: PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
1704: PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
1705: PetscCall(VecGetArrayRead(l->lvec, &xx));
1706: PetscCall(VecGetArray(b, &bb));
1707: }
1708: PetscCall(VecGetArray(lmask, &mask));
1709: /* remove zeroed rows of off-diagonal matrix */
1710: for (i = 0; i < len; ++i) {
1711: row = lrows[i];
1712: count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1713: aa = baij->a + baij->i[row / bs] * bs2 + (row % bs);
1714: for (k = 0; k < count; ++k) {
1715: aa[0] = 0.0;
1716: aa += bs;
1717: }
1718: }
1719: /* loop over all elements of off process part of matrix zeroing removed columns */
1720: for (i = 0; i < l->B->rmap->N; ++i) {
1721: row = i / bs;
1722: for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
1723: for (k = 0; k < bs; ++k) {
1724: col = bs * baij->j[j] + k;
1725: if (PetscAbsScalar(mask[col])) {
1726: aa = baij->a + j * bs2 + (i % bs) + bs * k;
1727: if (x) bb[i] -= aa[0] * xx[col];
1728: aa[0] = 0.0;
1729: }
1730: }
1731: }
1732: }
1733: if (x) {
1734: PetscCall(VecRestoreArray(b, &bb));
1735: PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1736: }
1737: PetscCall(VecRestoreArray(lmask, &mask));
1738: PetscCall(VecDestroy(&lmask));
1739: PetscCall(PetscFree(lrows));
1741: /* only change matrix nonzero state if pattern was allowed to be changed */
1742: if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
1743: PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1744: PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1745: }
1746: PetscFunctionReturn(PETSC_SUCCESS);
1747: }
1749: static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1750: {
1751: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1753: PetscFunctionBegin;
1754: PetscCall(MatSetUnfactored(a->A));
1755: PetscFunctionReturn(PETSC_SUCCESS);
1756: }
1758: static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
1760: static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1761: {
1762: Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
1763: Mat a, b, c, d;
1764: PetscBool flg;
1766: PetscFunctionBegin;
1767: a = matA->A;
1768: b = matA->B;
1769: c = matB->A;
1770: d = matB->B;
1772: PetscCall(MatEqual(a, c, &flg));
1773: if (flg) PetscCall(MatEqual(b, d, &flg));
1774: PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
1775: PetscFunctionReturn(PETSC_SUCCESS);
1776: }
1778: static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1779: {
1780: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1781: Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
1783: PetscFunctionBegin;
1784: /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
1785: if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1786: PetscCall(MatCopy_Basic(A, B, str));
1787: } else {
1788: PetscCall(MatCopy(a->A, b->A, str));
1789: PetscCall(MatCopy(a->B, b->B, str));
1790: }
1791: PetscCall(PetscObjectStateIncrease((PetscObject)B));
1792: PetscFunctionReturn(PETSC_SUCCESS);
1793: }
1795: PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1796: {
1797: PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs;
1798: Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
1799: Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
1801: PetscFunctionBegin;
1802: PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
1803: PetscFunctionReturn(PETSC_SUCCESS);
1804: }
1806: static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1807: {
1808: Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
1809: PetscBLASInt bnz, one = 1;
1810: Mat_SeqBAIJ *x, *y;
1811: PetscInt bs2 = Y->rmap->bs * Y->rmap->bs;
1813: PetscFunctionBegin;
1814: if (str == SAME_NONZERO_PATTERN) {
1815: PetscScalar alpha = a;
1816: x = (Mat_SeqBAIJ *)xx->A->data;
1817: y = (Mat_SeqBAIJ *)yy->A->data;
1818: PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1819: PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
1820: x = (Mat_SeqBAIJ *)xx->B->data;
1821: y = (Mat_SeqBAIJ *)yy->B->data;
1822: PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1823: PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
1824: PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1825: } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1826: PetscCall(MatAXPY_Basic(Y, a, X, str));
1827: } else {
1828: Mat B;
1829: PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
1830: PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
1831: PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
1832: PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
1833: PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
1834: PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
1835: PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
1836: PetscCall(MatSetType(B, MATMPIBAIJ));
1837: PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
1838: PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
1839: PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
1840: /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
1841: PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
1842: PetscCall(MatHeaderMerge(Y, &B));
1843: PetscCall(PetscFree(nnz_d));
1844: PetscCall(PetscFree(nnz_o));
1845: }
1846: PetscFunctionReturn(PETSC_SUCCESS);
1847: }
1849: static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1850: {
1851: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
1853: PetscFunctionBegin;
1854: PetscCall(MatConjugate_SeqBAIJ(a->A));
1855: PetscCall(MatConjugate_SeqBAIJ(a->B));
1856: PetscFunctionReturn(PETSC_SUCCESS);
1857: }
1859: static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1860: {
1861: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1863: PetscFunctionBegin;
1864: PetscCall(MatRealPart(a->A));
1865: PetscCall(MatRealPart(a->B));
1866: PetscFunctionReturn(PETSC_SUCCESS);
1867: }
1869: static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1870: {
1871: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1873: PetscFunctionBegin;
1874: PetscCall(MatImaginaryPart(a->A));
1875: PetscCall(MatImaginaryPart(a->B));
1876: PetscFunctionReturn(PETSC_SUCCESS);
1877: }
1879: static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1880: {
1881: IS iscol_local;
1882: PetscInt csize;
1884: PetscFunctionBegin;
1885: PetscCall(ISGetLocalSize(iscol, &csize));
1886: if (call == MAT_REUSE_MATRIX) {
1887: PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
1888: PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1889: } else {
1890: PetscCall(ISAllGather(iscol, &iscol_local));
1891: }
1892: PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1893: if (call == MAT_INITIAL_MATRIX) {
1894: PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
1895: PetscCall(ISDestroy(&iscol_local));
1896: }
1897: PetscFunctionReturn(PETSC_SUCCESS);
1898: }
1900: /*
1901: Not great since it makes two copies of the submatrix, first an SeqBAIJ
1902: in local and then by concatenating the local matrices the end result.
1903: Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
1904: This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
1905: */
1906: PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1907: {
1908: PetscMPIInt rank, size;
1909: PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1910: PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
1911: Mat M, Mreuse;
1912: MatScalar *vwork, *aa;
1913: MPI_Comm comm;
1914: IS isrow_new, iscol_new;
1915: Mat_SeqBAIJ *aij;
1917: PetscFunctionBegin;
1918: PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
1919: PetscCallMPI(MPI_Comm_rank(comm, &rank));
1920: PetscCallMPI(MPI_Comm_size(comm, &size));
1921: /* The compression and expansion should be avoided. Doesn't point
1922: out errors, might change the indices, hence buggey */
1923: PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1924: if (isrow == iscol) {
1925: iscol_new = isrow_new;
1926: PetscCall(PetscObjectReference((PetscObject)iscol_new));
1927: } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
1929: if (call == MAT_REUSE_MATRIX) {
1930: PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
1931: PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1932: PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
1933: } else {
1934: PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
1935: }
1936: PetscCall(ISDestroy(&isrow_new));
1937: PetscCall(ISDestroy(&iscol_new));
1938: /*
1939: m - number of local rows
1940: n - number of columns (same on all processors)
1941: rstart - first row in new global matrix generated
1942: */
1943: PetscCall(MatGetBlockSize(mat, &bs));
1944: PetscCall(MatGetSize(Mreuse, &m, &n));
1945: m = m / bs;
1946: n = n / bs;
1948: if (call == MAT_INITIAL_MATRIX) {
1949: aij = (Mat_SeqBAIJ *)Mreuse->data;
1950: ii = aij->i;
1951: jj = aij->j;
1953: /*
1954: Determine the number of non-zeros in the diagonal and off-diagonal
1955: portions of the matrix in order to do correct preallocation
1956: */
1958: /* first get start and end of "diagonal" columns */
1959: if (csize == PETSC_DECIDE) {
1960: PetscCall(ISGetSize(isrow, &mglobal));
1961: if (mglobal == n * bs) { /* square matrix */
1962: nlocal = m;
1963: } else {
1964: nlocal = n / size + ((n % size) > rank);
1965: }
1966: } else {
1967: nlocal = csize / bs;
1968: }
1969: PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
1970: rstart = rend - nlocal;
1971: PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
1973: /* next, compute all the lengths */
1974: PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
1975: for (i = 0; i < m; i++) {
1976: jend = ii[i + 1] - ii[i];
1977: olen = 0;
1978: dlen = 0;
1979: for (j = 0; j < jend; j++) {
1980: if (*jj < rstart || *jj >= rend) olen++;
1981: else dlen++;
1982: jj++;
1983: }
1984: olens[i] = olen;
1985: dlens[i] = dlen;
1986: }
1987: PetscCall(MatCreate(comm, &M));
1988: PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1989: PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
1990: PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
1991: PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
1992: PetscCall(PetscFree2(dlens, olens));
1993: } else {
1994: PetscInt ml, nl;
1996: M = *newmat;
1997: PetscCall(MatGetLocalSize(M, &ml, &nl));
1998: PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
1999: PetscCall(MatZeroEntries(M));
2000: /*
2001: The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
2002: rather than the slower MatSetValues().
2003: */
2004: M->was_assembled = PETSC_TRUE;
2005: M->assembled = PETSC_FALSE;
2006: }
2007: PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
2008: PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
2009: aij = (Mat_SeqBAIJ *)Mreuse->data;
2010: ii = aij->i;
2011: jj = aij->j;
2012: aa = aij->a;
2013: for (i = 0; i < m; i++) {
2014: row = rstart / bs + i;
2015: nz = ii[i + 1] - ii[i];
2016: cwork = jj;
2017: jj = PetscSafePointerPlusOffset(jj, nz);
2018: vwork = aa;
2019: aa = PetscSafePointerPlusOffset(aa, nz * bs * bs);
2020: PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
2021: }
2023: PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
2024: PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
2025: *newmat = M;
2027: /* save submatrix used in processor for next request */
2028: if (call == MAT_INITIAL_MATRIX) {
2029: PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
2030: PetscCall(PetscObjectDereference((PetscObject)Mreuse));
2031: }
2032: PetscFunctionReturn(PETSC_SUCCESS);
2033: }
2035: static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2036: {
2037: MPI_Comm comm, pcomm;
2038: PetscInt clocal_size, nrows;
2039: const PetscInt *rows;
2040: PetscMPIInt size;
2041: IS crowp, lcolp;
2043: PetscFunctionBegin;
2044: PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2045: /* make a collective version of 'rowp' */
2046: PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
2047: if (pcomm == comm) {
2048: crowp = rowp;
2049: } else {
2050: PetscCall(ISGetSize(rowp, &nrows));
2051: PetscCall(ISGetIndices(rowp, &rows));
2052: PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
2053: PetscCall(ISRestoreIndices(rowp, &rows));
2054: }
2055: PetscCall(ISSetPermutation(crowp));
2056: /* make a local version of 'colp' */
2057: PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
2058: PetscCallMPI(MPI_Comm_size(pcomm, &size));
2059: if (size == 1) {
2060: lcolp = colp;
2061: } else {
2062: PetscCall(ISAllGather(colp, &lcolp));
2063: }
2064: PetscCall(ISSetPermutation(lcolp));
2065: /* now we just get the submatrix */
2066: PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2067: PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2068: /* clean up */
2069: if (pcomm != comm) PetscCall(ISDestroy(&crowp));
2070: if (size > 1) PetscCall(ISDestroy(&lcolp));
2071: PetscFunctionReturn(PETSC_SUCCESS);
2072: }
2074: static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2075: {
2076: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
2077: Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data;
2079: PetscFunctionBegin;
2080: if (nghosts) *nghosts = B->nbs;
2081: if (ghosts) *ghosts = baij->garray;
2082: PetscFunctionReturn(PETSC_SUCCESS);
2083: }
2085: static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2086: {
2087: Mat B;
2088: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2089: Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2090: Mat_SeqAIJ *b;
2091: PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL;
2092: PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2093: PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2095: PetscFunctionBegin;
2096: PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
2097: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2099: /* Tell every processor the number of nonzeros per row */
2100: PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2101: for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
2102: PetscCall(PetscMalloc1(2 * size, &recvcounts));
2103: displs = recvcounts + size;
2104: for (i = 0; i < size; i++) {
2105: PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
2106: PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2107: }
2108: PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2109: /* Create the sequential matrix of the same type as the local block diagonal */
2110: PetscCall(MatCreate(PETSC_COMM_SELF, &B));
2111: PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
2112: PetscCall(MatSetType(B, MATSEQAIJ));
2113: PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2114: b = (Mat_SeqAIJ *)B->data;
2116: /* Copy my part of matrix column indices over */
2117: sendcount = ad->nz + bd->nz;
2118: jsendbuf = b->j + b->i[rstarts[rank] / bs];
2119: a_jsendbuf = ad->j;
2120: b_jsendbuf = bd->j;
2121: n = A->rmap->rend / bs - A->rmap->rstart / bs;
2122: cnt = 0;
2123: for (i = 0; i < n; i++) {
2124: /* put in lower diagonal portion */
2125: m = bd->i[i + 1] - bd->i[i];
2126: while (m > 0) {
2127: /* is it above diagonal (in bd (compressed) numbering) */
2128: if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2129: jsendbuf[cnt++] = garray[*b_jsendbuf++];
2130: m--;
2131: }
2133: /* put in diagonal portion */
2134: for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2136: /* put in upper diagonal portion */
2137: while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2138: }
2139: PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2141: /* Gather all column indices to all processors */
2142: for (i = 0; i < size; i++) {
2143: recvcounts[i] = 0;
2144: for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2145: }
2146: displs[0] = 0;
2147: for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
2148: PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2149: /* Assemble the matrix into usable form (note numerical values not yet set) */
2150: /* set the b->ilen (length of each row) values */
2151: PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2152: /* set the b->i indices */
2153: b->i[0] = 0;
2154: for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
2155: PetscCall(PetscFree(lens));
2156: PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2157: PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
2158: PetscCall(PetscFree(recvcounts));
2160: PetscCall(MatPropagateSymmetryOptions(A, B));
2161: *newmat = B;
2162: PetscFunctionReturn(PETSC_SUCCESS);
2163: }
2165: static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2166: {
2167: Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2168: Vec bb1 = NULL;
2170: PetscFunctionBegin;
2171: if (flag == SOR_APPLY_UPPER) {
2172: PetscUseTypeMethod(mat->A, sor, bb, omega, flag, fshift, lits, 1, xx);
2173: PetscFunctionReturn(PETSC_SUCCESS);
2174: }
2176: if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
2178: if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2179: if (flag & SOR_ZERO_INITIAL_GUESS) {
2180: PetscUseTypeMethod(mat->A, sor, bb, omega, flag, fshift, lits, 1, xx);
2181: its--;
2182: }
2184: while (its--) {
2185: PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2186: PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2188: /* update rhs: bb1 = bb - B*x */
2189: PetscCall(VecScale(mat->lvec, -1.0));
2190: PetscUseTypeMethod(mat->B, multadd, mat->lvec, bb, bb1);
2192: /* local sweep */
2193: PetscUseTypeMethod(mat->A, sor, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx);
2194: }
2195: } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2196: if (flag & SOR_ZERO_INITIAL_GUESS) {
2197: PetscUseTypeMethod(mat->A, sor, bb, omega, flag, fshift, lits, 1, xx);
2198: its--;
2199: }
2200: while (its--) {
2201: PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2202: PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2204: /* update rhs: bb1 = bb - B*x */
2205: PetscCall(VecScale(mat->lvec, -1.0));
2206: PetscUseTypeMethod(mat->B, multadd, mat->lvec, bb, bb1);
2208: /* local sweep */
2209: PetscUseTypeMethod(mat->A, sor, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx);
2210: }
2211: } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2212: if (flag & SOR_ZERO_INITIAL_GUESS) {
2213: PetscUseTypeMethod(mat->A, sor, bb, omega, flag, fshift, lits, 1, xx);
2214: its--;
2215: }
2216: while (its--) {
2217: PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2218: PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2220: /* update rhs: bb1 = bb - B*x */
2221: PetscCall(VecScale(mat->lvec, -1.0));
2222: PetscUseTypeMethod(mat->B, multadd, mat->lvec, bb, bb1);
2224: /* local sweep */
2225: PetscUseTypeMethod(mat->A, sor, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx);
2226: }
2227: } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2229: PetscCall(VecDestroy(&bb1));
2230: PetscFunctionReturn(PETSC_SUCCESS);
2231: }
2233: static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2234: {
2235: Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2236: PetscInt m, N, i, *garray = aij->garray;
2237: PetscInt ib, jb, bs = A->rmap->bs;
2238: Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
2239: MatScalar *a_val = a_aij->a;
2240: Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
2241: MatScalar *b_val = b_aij->a;
2242: PetscReal *work;
2244: PetscFunctionBegin;
2245: PetscCall(MatGetSize(A, &m, &N));
2246: PetscCall(PetscCalloc1(N, &work));
2247: if (type == NORM_2) {
2248: for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2249: for (jb = 0; jb < bs; jb++) {
2250: for (ib = 0; ib < bs; ib++) {
2251: work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
2252: a_val++;
2253: }
2254: }
2255: }
2256: for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2257: for (jb = 0; jb < bs; jb++) {
2258: for (ib = 0; ib < bs; ib++) {
2259: work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
2260: b_val++;
2261: }
2262: }
2263: }
2264: } else if (type == NORM_1) {
2265: for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2266: for (jb = 0; jb < bs; jb++) {
2267: for (ib = 0; ib < bs; ib++) {
2268: work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
2269: a_val++;
2270: }
2271: }
2272: }
2273: for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2274: for (jb = 0; jb < bs; jb++) {
2275: for (ib = 0; ib < bs; ib++) {
2276: work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
2277: b_val++;
2278: }
2279: }
2280: }
2281: } else if (type == NORM_INFINITY) {
2282: for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2283: for (jb = 0; jb < bs; jb++) {
2284: for (ib = 0; ib < bs; ib++) {
2285: PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
2286: work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
2287: a_val++;
2288: }
2289: }
2290: }
2291: for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2292: for (jb = 0; jb < bs; jb++) {
2293: for (ib = 0; ib < bs; ib++) {
2294: PetscInt col = garray[b_aij->j[i]] * bs + jb;
2295: work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
2296: b_val++;
2297: }
2298: }
2299: }
2300: } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2301: for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2302: for (jb = 0; jb < bs; jb++) {
2303: for (ib = 0; ib < bs; ib++) {
2304: work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2305: a_val++;
2306: }
2307: }
2308: }
2309: for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2310: for (jb = 0; jb < bs; jb++) {
2311: for (ib = 0; ib < bs; ib++) {
2312: work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2313: b_val++;
2314: }
2315: }
2316: }
2317: } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2318: for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2319: for (jb = 0; jb < bs; jb++) {
2320: for (ib = 0; ib < bs; ib++) {
2321: work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2322: a_val++;
2323: }
2324: }
2325: }
2326: for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2327: for (jb = 0; jb < bs; jb++) {
2328: for (ib = 0; ib < bs; ib++) {
2329: work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2330: b_val++;
2331: }
2332: }
2333: }
2334: } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2335: if (type == NORM_INFINITY) {
2336: PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
2337: } else {
2338: PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
2339: }
2340: PetscCall(PetscFree(work));
2341: if (type == NORM_2) {
2342: for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2343: } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2344: for (i = 0; i < N; i++) reductions[i] /= m;
2345: }
2346: PetscFunctionReturn(PETSC_SUCCESS);
2347: }
2349: static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2350: {
2351: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2353: PetscFunctionBegin;
2354: PetscCall(MatInvertBlockDiagonal(a->A, values));
2355: A->factorerrortype = a->A->factorerrortype;
2356: A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
2357: A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row;
2358: PetscFunctionReturn(PETSC_SUCCESS);
2359: }
2361: static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2362: {
2363: Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
2364: Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data;
2366: PetscFunctionBegin;
2367: if (!Y->preallocated) {
2368: PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
2369: } else if (!aij->nz) {
2370: PetscInt nonew = aij->nonew;
2371: PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2372: aij->nonew = nonew;
2373: }
2374: PetscCall(MatShift_Basic(Y, a));
2375: PetscFunctionReturn(PETSC_SUCCESS);
2376: }
2378: static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2379: {
2380: PetscFunctionBegin;
2381: *a = ((Mat_MPIBAIJ *)A->data)->A;
2382: PetscFunctionReturn(PETSC_SUCCESS);
2383: }
2385: static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
2386: {
2387: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2389: PetscFunctionBegin;
2390: PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients
2391: PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
2392: PetscFunctionReturn(PETSC_SUCCESS);
2393: }
2395: static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2396: MatGetRow_MPIBAIJ,
2397: MatRestoreRow_MPIBAIJ,
2398: MatMult_MPIBAIJ,
2399: /* 4*/ MatMultAdd_MPIBAIJ,
2400: MatMultTranspose_MPIBAIJ,
2401: MatMultTransposeAdd_MPIBAIJ,
2402: NULL,
2403: NULL,
2404: NULL,
2405: /*10*/ NULL,
2406: NULL,
2407: NULL,
2408: MatSOR_MPIBAIJ,
2409: MatTranspose_MPIBAIJ,
2410: /*15*/ MatGetInfo_MPIBAIJ,
2411: MatEqual_MPIBAIJ,
2412: MatGetDiagonal_MPIBAIJ,
2413: MatDiagonalScale_MPIBAIJ,
2414: MatNorm_MPIBAIJ,
2415: /*20*/ MatAssemblyBegin_MPIBAIJ,
2416: MatAssemblyEnd_MPIBAIJ,
2417: MatSetOption_MPIBAIJ,
2418: MatZeroEntries_MPIBAIJ,
2419: /*24*/ MatZeroRows_MPIBAIJ,
2420: NULL,
2421: NULL,
2422: NULL,
2423: NULL,
2424: /*29*/ MatSetUp_MPI_Hash,
2425: NULL,
2426: NULL,
2427: MatGetDiagonalBlock_MPIBAIJ,
2428: NULL,
2429: /*34*/ MatDuplicate_MPIBAIJ,
2430: NULL,
2431: NULL,
2432: NULL,
2433: NULL,
2434: /*39*/ MatAXPY_MPIBAIJ,
2435: MatCreateSubMatrices_MPIBAIJ,
2436: MatIncreaseOverlap_MPIBAIJ,
2437: MatGetValues_MPIBAIJ,
2438: MatCopy_MPIBAIJ,
2439: /*44*/ NULL,
2440: MatScale_MPIBAIJ,
2441: MatShift_MPIBAIJ,
2442: NULL,
2443: MatZeroRowsColumns_MPIBAIJ,
2444: /*49*/ NULL,
2445: NULL,
2446: NULL,
2447: NULL,
2448: NULL,
2449: /*54*/ MatFDColoringCreate_MPIXAIJ,
2450: NULL,
2451: MatSetUnfactored_MPIBAIJ,
2452: MatPermute_MPIBAIJ,
2453: MatSetValuesBlocked_MPIBAIJ,
2454: /*59*/ MatCreateSubMatrix_MPIBAIJ,
2455: MatDestroy_MPIBAIJ,
2456: MatView_MPIBAIJ,
2457: NULL,
2458: NULL,
2459: /*64*/ NULL,
2460: NULL,
2461: NULL,
2462: NULL,
2463: MatGetRowMaxAbs_MPIBAIJ,
2464: /*69*/ NULL,
2465: NULL,
2466: NULL,
2467: MatFDColoringApply_BAIJ,
2468: NULL,
2469: /*74*/ NULL,
2470: NULL,
2471: NULL,
2472: NULL,
2473: MatLoad_MPIBAIJ,
2474: /*79*/ NULL,
2475: NULL,
2476: NULL,
2477: NULL,
2478: NULL,
2479: /*84*/ NULL,
2480: NULL,
2481: NULL,
2482: NULL,
2483: NULL,
2484: /*89*/ NULL,
2485: NULL,
2486: NULL,
2487: NULL,
2488: MatConjugate_MPIBAIJ,
2489: /*94*/ NULL,
2490: NULL,
2491: MatRealPart_MPIBAIJ,
2492: MatImaginaryPart_MPIBAIJ,
2493: NULL,
2494: /*99*/ NULL,
2495: NULL,
2496: NULL,
2497: NULL,
2498: NULL,
2499: /*104*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2500: NULL,
2501: MatGetGhosts_MPIBAIJ,
2502: NULL,
2503: NULL,
2504: /*109*/ NULL,
2505: NULL,
2506: NULL,
2507: NULL,
2508: MatGetMultiProcBlock_MPIBAIJ,
2509: /*114*/ NULL,
2510: MatGetColumnReductions_MPIBAIJ,
2511: MatInvertBlockDiagonal_MPIBAIJ,
2512: NULL,
2513: NULL,
2514: /*119*/ NULL,
2515: NULL,
2516: NULL,
2517: NULL,
2518: NULL,
2519: /*124*/ NULL,
2520: MatSetBlockSizes_Default,
2521: NULL,
2522: MatFDColoringSetUp_MPIXAIJ,
2523: NULL,
2524: /*129*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2525: NULL,
2526: NULL,
2527: NULL,
2528: NULL,
2529: /*134*/ NULL,
2530: MatEliminateZeros_MPIBAIJ,
2531: MatGetRowSumAbs_MPIBAIJ,
2532: NULL,
2533: NULL,
2534: /*139*/ NULL,
2535: MatCopyHashToXAIJ_MPI_Hash,
2536: NULL,
2537: NULL,
2538: MatADot_Default,
2539: /*144*/ MatANorm_Default,
2540: NULL,
2541: NULL};
2543: PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2544: PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2546: static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2547: {
2548: PetscInt m, rstart, cstart, cend;
2549: PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2550: const PetscInt *JJ = NULL;
2551: PetscScalar *values = NULL;
2552: PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
2553: PetscBool nooffprocentries;
2555: PetscFunctionBegin;
2556: PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
2557: PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
2558: PetscCall(PetscLayoutSetUp(B->rmap));
2559: PetscCall(PetscLayoutSetUp(B->cmap));
2560: PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2561: m = B->rmap->n / bs;
2562: rstart = B->rmap->rstart / bs;
2563: cstart = B->cmap->rstart / bs;
2564: cend = B->cmap->rend / bs;
2566: PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
2567: PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2568: for (i = 0; i < m; i++) {
2569: nz = ii[i + 1] - ii[i];
2570: PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2571: nz_max = PetscMax(nz_max, nz);
2572: dlen = 0;
2573: olen = 0;
2574: JJ = jj + ii[i];
2575: for (j = 0; j < nz; j++) {
2576: if (*JJ < cstart || *JJ >= cend) olen++;
2577: else dlen++;
2578: JJ++;
2579: }
2580: d_nnz[i] = dlen;
2581: o_nnz[i] = olen;
2582: }
2583: PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
2584: PetscCall(PetscFree2(d_nnz, o_nnz));
2586: values = (PetscScalar *)V;
2587: if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2588: for (i = 0; i < m; i++) {
2589: PetscInt row = i + rstart;
2590: PetscInt ncols = ii[i + 1] - ii[i];
2591: const PetscInt *icols = jj + ii[i];
2592: if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2593: const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
2594: PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2595: } else { /* block ordering does not match so we can only insert one block at a time. */
2596: PetscInt j;
2597: for (j = 0; j < ncols; j++) {
2598: const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
2599: PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
2600: }
2601: }
2602: }
2604: if (!V) PetscCall(PetscFree(values));
2605: nooffprocentries = B->nooffprocentries;
2606: B->nooffprocentries = PETSC_TRUE;
2607: PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2608: PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
2609: B->nooffprocentries = nooffprocentries;
2611: PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2612: PetscFunctionReturn(PETSC_SUCCESS);
2613: }
2615: /*@C
2616: MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2618: Collective
2620: Input Parameters:
2621: + B - the matrix
2622: . bs - the block size
2623: . i - the indices into `j` for the start of each local row (starts with zero)
2624: . j - the column indices for each local row (starts with zero) these must be sorted for each row
2625: - v - optional values in the matrix, use `NULL` if not provided
2627: Level: advanced
2629: Notes:
2630: The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2631: thus you CANNOT change the matrix entries by changing the values of `v` after you have
2632: called this routine.
2634: The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs
2635: may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
2636: over rows within a block and the last index is over columns within a block row. Fortran programs will likely set
2637: `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
2638: block column and the second index is over columns within a block.
2640: Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2642: .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2643: @*/
2644: PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2645: {
2646: PetscFunctionBegin;
2650: PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
2651: PetscFunctionReturn(PETSC_SUCCESS);
2652: }
2654: PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2655: {
2656: Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2657: PetscInt i;
2658: PetscMPIInt size;
2660: PetscFunctionBegin;
2661: if (B->hash_active) {
2662: B->ops[0] = b->cops;
2663: B->hash_active = PETSC_FALSE;
2664: }
2665: if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
2666: PetscCall(MatSetBlockSize(B, bs));
2667: PetscCall(PetscLayoutSetUp(B->rmap));
2668: PetscCall(PetscLayoutSetUp(B->cmap));
2669: PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2671: if (d_nnz) {
2672: for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2673: }
2674: if (o_nnz) {
2675: for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2676: }
2678: b->bs2 = bs * bs;
2679: b->mbs = B->rmap->n / bs;
2680: b->nbs = B->cmap->n / bs;
2681: b->Mbs = B->rmap->N / bs;
2682: b->Nbs = B->cmap->N / bs;
2684: for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2685: b->rstartbs = B->rmap->rstart / bs;
2686: b->rendbs = B->rmap->rend / bs;
2687: b->cstartbs = B->cmap->rstart / bs;
2688: b->cendbs = B->cmap->rend / bs;
2690: #if defined(PETSC_USE_CTABLE)
2691: PetscCall(PetscHMapIDestroy(&b->colmap));
2692: #else
2693: PetscCall(PetscFree(b->colmap));
2694: #endif
2695: PetscCall(PetscFree(b->garray));
2696: PetscCall(VecDestroy(&b->lvec));
2697: PetscCall(VecScatterDestroy(&b->Mvctx));
2699: PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2701: MatSeqXAIJGetOptions_Private(b->B);
2702: PetscCall(MatDestroy(&b->B));
2703: PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
2704: PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
2705: PetscCall(MatSetType(b->B, MATSEQBAIJ));
2706: MatSeqXAIJRestoreOptions_Private(b->B);
2708: MatSeqXAIJGetOptions_Private(b->A);
2709: PetscCall(MatDestroy(&b->A));
2710: PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
2711: PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
2712: PetscCall(MatSetType(b->A, MATSEQBAIJ));
2713: MatSeqXAIJRestoreOptions_Private(b->A);
2715: PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
2716: PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2717: B->preallocated = PETSC_TRUE;
2718: B->was_assembled = PETSC_FALSE;
2719: B->assembled = PETSC_FALSE;
2720: PetscFunctionReturn(PETSC_SUCCESS);
2721: }
2723: extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
2724: extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
2726: PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2727: {
2728: Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2729: Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
2730: PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
2731: const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
2733: PetscFunctionBegin;
2734: PetscCall(PetscMalloc1(M + 1, &ii));
2735: ii[0] = 0;
2736: for (i = 0; i < M; i++) {
2737: PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
2738: PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
2739: ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
2740: /* remove one from count of matrix has diagonal */
2741: for (j = id[i]; j < id[i + 1]; j++) {
2742: if (jd[j] == i) {
2743: ii[i + 1]--;
2744: break;
2745: }
2746: }
2747: }
2748: PetscCall(PetscMalloc1(ii[M], &jj));
2749: cnt = 0;
2750: for (i = 0; i < M; i++) {
2751: for (j = io[i]; j < io[i + 1]; j++) {
2752: if (garray[jo[j]] > rstart) break;
2753: jj[cnt++] = garray[jo[j]];
2754: }
2755: for (k = id[i]; k < id[i + 1]; k++) {
2756: if (jd[k] != i) jj[cnt++] = rstart + jd[k];
2757: }
2758: for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
2759: }
2760: PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
2761: PetscFunctionReturn(PETSC_SUCCESS);
2762: }
2764: #include <../src/mat/impls/aij/mpi/mpiaij.h>
2766: PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2768: PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2769: {
2770: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2771: Mat_MPIAIJ *b;
2772: Mat B;
2774: PetscFunctionBegin;
2775: PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
2777: if (reuse == MAT_REUSE_MATRIX) {
2778: B = *newmat;
2779: } else {
2780: PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2781: PetscCall(MatSetType(B, MATMPIAIJ));
2782: PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2783: PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
2784: PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
2785: PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
2786: }
2787: b = (Mat_MPIAIJ *)B->data;
2789: if (reuse == MAT_REUSE_MATRIX) {
2790: PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
2791: PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
2792: } else {
2793: PetscInt *garray = a->garray;
2794: Mat_SeqAIJ *bB;
2795: PetscInt bs, nnz;
2796: PetscCall(MatDestroy(&b->A));
2797: PetscCall(MatDestroy(&b->B));
2798: /* just clear out the data structure */
2799: PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
2800: PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
2801: PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
2803: /* Global numbering for b->B columns */
2804: bB = (Mat_SeqAIJ *)b->B->data;
2805: bs = A->rmap->bs;
2806: nnz = bB->i[A->rmap->n];
2807: for (PetscInt k = 0; k < nnz; k++) {
2808: PetscInt bj = bB->j[k] / bs;
2809: PetscInt br = bB->j[k] % bs;
2810: bB->j[k] = garray[bj] * bs + br;
2811: }
2812: }
2813: PetscCall(MatSetOption(B, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2814: PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2815: PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
2816: PetscCall(MatSetOption(B, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
2818: if (reuse == MAT_INPLACE_MATRIX) {
2819: PetscCall(MatHeaderReplace(A, &B));
2820: } else {
2821: *newmat = B;
2822: }
2823: PetscFunctionReturn(PETSC_SUCCESS);
2824: }
2826: /*MC
2827: MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
2829: Options Database Keys:
2830: + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
2831: . -mat_block_size bs - set the blocksize used to store the matrix
2832: . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS)
2833: - -mat_use_hash_table fact - set hash table factor
2835: Level: beginner
2837: Note:
2838: `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
2839: space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
2841: .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
2842: M*/
2844: PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2846: PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2847: {
2848: Mat_MPIBAIJ *b;
2849: PetscBool flg = PETSC_FALSE;
2851: PetscFunctionBegin;
2852: PetscCall(PetscNew(&b));
2853: B->data = (void *)b;
2854: B->ops[0] = MatOps_Values;
2855: B->assembled = PETSC_FALSE;
2857: B->insertmode = NOT_SET_VALUES;
2858: PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
2859: PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2861: /* build local table of row and column ownerships */
2862: PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2864: /* build cache for off array entries formed */
2865: PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
2867: b->donotstash = PETSC_FALSE;
2868: b->colmap = NULL;
2869: b->garray = NULL;
2870: b->roworiented = PETSC_TRUE;
2872: /* stuff used in block assembly */
2873: b->barray = NULL;
2875: /* stuff used for matrix vector multiply */
2876: b->lvec = NULL;
2877: b->Mvctx = NULL;
2879: /* stuff for MatGetRow() */
2880: b->rowindices = NULL;
2881: b->rowvalues = NULL;
2882: b->getrowactive = PETSC_FALSE;
2884: /* hash table stuff */
2885: b->ht = NULL;
2886: b->hd = NULL;
2887: b->ht_size = 0;
2888: b->ht_flag = PETSC_FALSE;
2889: b->ht_fact = 0;
2890: b->ht_total_ct = 0;
2891: b->ht_insert_ct = 0;
2893: /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
2894: b->ijonly = PETSC_FALSE;
2896: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
2897: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
2898: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
2899: #if defined(PETSC_HAVE_HYPRE)
2900: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
2901: #endif
2902: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
2903: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
2904: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
2905: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
2906: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
2907: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
2908: PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
2909: PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
2911: PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
2912: PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
2913: if (flg) {
2914: PetscReal fact = 1.39;
2915: PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
2916: PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
2917: if (fact <= 1.0) fact = 1.39;
2918: PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
2919: PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
2920: }
2921: PetscOptionsEnd();
2922: PetscFunctionReturn(PETSC_SUCCESS);
2923: }
2925: // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2926: /*MC
2927: MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2929: This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
2930: and `MATMPIBAIJ` otherwise.
2932: Options Database Keys:
2933: . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2935: Level: beginner
2937: .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2938: M*/
2940: /*@
2941: MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
2942: (block compressed row).
2944: Collective
2946: Input Parameters:
2947: + B - the matrix
2948: . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
2949: blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2950: . d_nz - number of block nonzeros per block row in diagonal portion of local
2951: submatrix (same for all local rows)
2952: . d_nnz - array containing the number of block nonzeros in the various block rows
2953: of the in diagonal portion of the local (possibly different for each block
2954: row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and
2955: set it even if it is zero.
2956: . o_nz - number of block nonzeros per block row in the off-diagonal portion of local
2957: submatrix (same for all local rows).
2958: - o_nnz - array containing the number of nonzeros in the various block rows of the
2959: off-diagonal portion of the local submatrix (possibly different for
2960: each block row) or `NULL`.
2962: If the *_nnz parameter is given then the *_nz parameter is ignored
2964: Options Database Keys:
2965: + -mat_block_size - size of the blocks to use
2966: - -mat_use_hash_table fact - set hash table factor
2968: Level: intermediate
2970: Notes:
2971: For good matrix assembly performance
2972: the user should preallocate the matrix storage by setting the parameters
2973: `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately,
2974: performance can be increased by more than a factor of 50.
2976: If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2977: than it must be used on all processors that share the object for that argument.
2979: Storage Information:
2980: For a square global matrix we define each processor's diagonal portion
2981: to be its local rows and the corresponding columns (a square submatrix);
2982: each processor's off-diagonal portion encompasses the remainder of the
2983: local matrix (a rectangular submatrix).
2985: The user can specify preallocated storage for the diagonal part of
2986: the local submatrix with either `d_nz` or `d_nnz` (not both). Set
2987: `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2988: memory allocation. Likewise, specify preallocated storage for the
2989: off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2991: Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2992: the figure below we depict these three local rows and all columns (0-11).
2994: .vb
2995: 0 1 2 3 4 5 6 7 8 9 10 11
2996: --------------------------
2997: row 3 |o o o d d d o o o o o o
2998: row 4 |o o o d d d o o o o o o
2999: row 5 |o o o d d d o o o o o o
3000: --------------------------
3001: .ve
3003: Thus, any entries in the d locations are stored in the d (diagonal)
3004: submatrix, and any entries in the o locations are stored in the
3005: o (off-diagonal) submatrix. Note that the d and the o submatrices are
3006: stored simply in the `MATSEQBAIJ` format for compressed row storage.
3008: Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
3009: and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3010: In general, for PDE problems in which most nonzeros are near the diagonal,
3011: one expects `d_nz` >> `o_nz`.
3013: You can call `MatGetInfo()` to get information on how effective the preallocation was;
3014: for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3015: You can also run with the option `-info` and look for messages with the string
3016: malloc in them to see if additional memory allocation was needed.
3018: .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3019: @*/
3020: PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3021: {
3022: PetscFunctionBegin;
3026: PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
3027: PetscFunctionReturn(PETSC_SUCCESS);
3028: }
3030: // PetscClangLinter pragma disable: -fdoc-section-header-unknown
3031: /*@
3032: MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
3033: (block compressed row).
3035: Collective
3037: Input Parameters:
3038: + comm - MPI communicator
3039: . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
3040: blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
3041: . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
3042: This value should be the same as the local size used in creating the
3043: y vector for the matrix-vector product y = Ax.
3044: . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
3045: This value should be the same as the local size used in creating the
3046: x vector for the matrix-vector product y = Ax.
3047: . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
3048: . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
3049: . d_nz - number of nonzero blocks per block row in diagonal portion of local
3050: submatrix (same for all local rows)
3051: . d_nnz - array containing the number of nonzero blocks in the various block rows
3052: of the in diagonal portion of the local (possibly different for each block
3053: row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry
3054: and set it even if it is zero.
3055: . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local
3056: submatrix (same for all local rows).
3057: - o_nnz - array containing the number of nonzero blocks in the various block rows of the
3058: off-diagonal portion of the local submatrix (possibly different for
3059: each block row) or NULL.
3061: Output Parameter:
3062: . A - the matrix
3064: Options Database Keys:
3065: + -mat_block_size - size of the blocks to use
3066: - -mat_use_hash_table fact - set hash table factor
3068: Level: intermediate
3070: Notes:
3071: It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
3072: MatXXXXSetPreallocation() paradigm instead of this routine directly.
3073: [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
3075: For good matrix assembly performance
3076: the user should preallocate the matrix storage by setting the parameters
3077: `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately,
3078: performance can be increased by more than a factor of 50.
3080: If the *_nnz parameter is given then the *_nz parameter is ignored
3082: A nonzero block is any block that as 1 or more nonzeros in it
3084: The user MUST specify either the local or global matrix dimensions
3085: (possibly both).
3087: If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
3088: than it must be used on all processors that share the object for that argument.
3090: If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3091: `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3093: Storage Information:
3094: For a square global matrix we define each processor's diagonal portion
3095: to be its local rows and the corresponding columns (a square submatrix);
3096: each processor's off-diagonal portion encompasses the remainder of the
3097: local matrix (a rectangular submatrix).
3099: The user can specify preallocated storage for the diagonal part of
3100: the local submatrix with either d_nz or d_nnz (not both). Set
3101: `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3102: memory allocation. Likewise, specify preallocated storage for the
3103: off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3105: Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3106: the figure below we depict these three local rows and all columns (0-11).
3108: .vb
3109: 0 1 2 3 4 5 6 7 8 9 10 11
3110: --------------------------
3111: row 3 |o o o d d d o o o o o o
3112: row 4 |o o o d d d o o o o o o
3113: row 5 |o o o d d d o o o o o o
3114: --------------------------
3115: .ve
3117: Thus, any entries in the d locations are stored in the d (diagonal)
3118: submatrix, and any entries in the o locations are stored in the
3119: o (off-diagonal) submatrix. Note that the d and the o submatrices are
3120: stored simply in the `MATSEQBAIJ` format for compressed row storage.
3122: Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
3123: and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3124: In general, for PDE problems in which most nonzeros are near the diagonal,
3125: one expects `d_nz` >> `o_nz`.
3127: .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3128: `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
3129: @*/
3130: PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3131: {
3132: PetscMPIInt size;
3134: PetscFunctionBegin;
3135: PetscCall(MatCreate(comm, A));
3136: PetscCall(MatSetSizes(*A, m, n, M, N));
3137: PetscCallMPI(MPI_Comm_size(comm, &size));
3138: if (size > 1) {
3139: PetscCall(MatSetType(*A, MATMPIBAIJ));
3140: PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3141: } else {
3142: PetscCall(MatSetType(*A, MATSEQBAIJ));
3143: PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
3144: }
3145: PetscFunctionReturn(PETSC_SUCCESS);
3146: }
3148: static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3149: {
3150: Mat mat;
3151: Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3152: PetscInt len = 0;
3154: PetscFunctionBegin;
3155: *newmat = NULL;
3156: PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
3157: PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
3158: PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
3160: PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3161: PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3162: if (matin->hash_active) PetscCall(MatSetUp(mat));
3163: else {
3164: mat->factortype = matin->factortype;
3165: mat->preallocated = PETSC_TRUE;
3166: mat->assembled = PETSC_TRUE;
3167: mat->insertmode = NOT_SET_VALUES;
3169: a = (Mat_MPIBAIJ *)mat->data;
3170: mat->rmap->bs = matin->rmap->bs;
3171: a->bs2 = oldmat->bs2;
3172: a->mbs = oldmat->mbs;
3173: a->nbs = oldmat->nbs;
3174: a->Mbs = oldmat->Mbs;
3175: a->Nbs = oldmat->Nbs;
3177: a->size = oldmat->size;
3178: a->rank = oldmat->rank;
3179: a->donotstash = oldmat->donotstash;
3180: a->roworiented = oldmat->roworiented;
3181: a->rowindices = NULL;
3182: a->rowvalues = NULL;
3183: a->getrowactive = PETSC_FALSE;
3184: a->barray = NULL;
3185: a->rstartbs = oldmat->rstartbs;
3186: a->rendbs = oldmat->rendbs;
3187: a->cstartbs = oldmat->cstartbs;
3188: a->cendbs = oldmat->cendbs;
3190: /* hash table stuff */
3191: a->ht = NULL;
3192: a->hd = NULL;
3193: a->ht_size = 0;
3194: a->ht_flag = oldmat->ht_flag;
3195: a->ht_fact = oldmat->ht_fact;
3196: a->ht_total_ct = 0;
3197: a->ht_insert_ct = 0;
3199: PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
3200: if (oldmat->colmap) {
3201: #if defined(PETSC_USE_CTABLE)
3202: PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3203: #else
3204: PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
3205: PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
3206: #endif
3207: } else a->colmap = NULL;
3209: if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
3210: PetscCall(PetscMalloc1(len, &a->garray));
3211: PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3212: } else a->garray = NULL;
3214: PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
3215: PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3216: PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
3218: PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
3219: PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3220: }
3221: PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
3222: *newmat = mat;
3223: PetscFunctionReturn(PETSC_SUCCESS);
3224: }
3226: /* Used for both MPIBAIJ and MPISBAIJ matrices */
3227: PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3228: {
3229: PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3230: PetscInt *rowidxs, *colidxs, rs, cs, ce;
3231: PetscScalar *matvals;
3233: PetscFunctionBegin;
3234: PetscCall(PetscViewerSetUp(viewer));
3236: /* read in matrix header */
3237: PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
3238: PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
3239: M = header[1];
3240: N = header[2];
3241: nz = header[3];
3242: PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
3243: PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
3244: PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3246: /* set block sizes from the viewer's .info file */
3247: PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3248: /* set local sizes if not set already */
3249: if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3250: if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3251: /* set global sizes if not set already */
3252: if (mat->rmap->N < 0) mat->rmap->N = M;
3253: if (mat->cmap->N < 0) mat->cmap->N = N;
3254: PetscCall(PetscLayoutSetUp(mat->rmap));
3255: PetscCall(PetscLayoutSetUp(mat->cmap));
3257: /* check if the matrix sizes are correct */
3258: PetscCall(MatGetSize(mat, &rows, &cols));
3259: PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
3260: PetscCall(MatGetBlockSize(mat, &bs));
3261: PetscCall(MatGetLocalSize(mat, &m, &n));
3262: PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
3263: PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
3264: mbs = m / bs;
3265: nbs = n / bs;
3267: /* read in row lengths and build row indices */
3268: PetscCall(PetscMalloc1(m + 1, &rowidxs));
3269: PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
3270: rowidxs[0] = 0;
3271: for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3272: PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
3273: PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3275: /* read in column indices and matrix values */
3276: PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
3277: PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
3278: PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3280: { /* preallocate matrix storage */
3281: PetscBT bt; /* helper bit set to count diagonal nonzeros */
3282: PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3283: PetscBool sbaij, done;
3284: PetscInt *d_nnz, *o_nnz;
3286: PetscCall(PetscBTCreate(nbs, &bt));
3287: PetscCall(PetscHSetICreate(&ht));
3288: PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
3289: PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3290: for (i = 0; i < mbs; i++) {
3291: PetscCall(PetscBTMemzero(nbs, bt));
3292: PetscCall(PetscHSetIClear(ht));
3293: for (k = 0; k < bs; k++) {
3294: PetscInt row = bs * i + k;
3295: for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3296: PetscInt col = colidxs[j];
3297: if (!sbaij || col >= row) {
3298: if (col >= cs && col < ce) {
3299: if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3300: } else {
3301: PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3302: if (done) o_nnz[i]++;
3303: }
3304: }
3305: }
3306: }
3307: }
3308: PetscCall(PetscBTDestroy(&bt));
3309: PetscCall(PetscHSetIDestroy(&ht));
3310: PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
3311: PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
3312: PetscCall(PetscFree2(d_nnz, o_nnz));
3313: }
3315: /* store matrix values */
3316: for (i = 0; i < m; i++) {
3317: PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
3318: PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3319: }
3321: PetscCall(PetscFree(rowidxs));
3322: PetscCall(PetscFree2(colidxs, matvals));
3323: PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
3324: PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
3325: PetscFunctionReturn(PETSC_SUCCESS);
3326: }
3328: PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3329: {
3330: PetscBool isbinary;
3332: PetscFunctionBegin;
3333: PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
3334: PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
3335: PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
3336: PetscFunctionReturn(PETSC_SUCCESS);
3337: }
3339: /*@
3340: MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3342: Input Parameters:
3343: + mat - the matrix
3344: - fact - factor
3346: Options Database Key:
3347: . -mat_use_hash_table fact - provide the factor
3349: Level: advanced
3351: .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3352: @*/
3353: PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3354: {
3355: PetscFunctionBegin;
3356: PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
3357: PetscFunctionReturn(PETSC_SUCCESS);
3358: }
3360: PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3361: {
3362: Mat_MPIBAIJ *baij;
3364: PetscFunctionBegin;
3365: baij = (Mat_MPIBAIJ *)mat->data;
3366: baij->ht_fact = fact;
3367: PetscFunctionReturn(PETSC_SUCCESS);
3368: }
3370: PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3371: {
3372: Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3373: PetscBool flg;
3375: PetscFunctionBegin;
3376: PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
3377: PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
3378: if (Ad) *Ad = a->A;
3379: if (Ao) *Ao = a->B;
3380: if (colmap) *colmap = a->garray;
3381: PetscFunctionReturn(PETSC_SUCCESS);
3382: }
3384: /*
3385: Special version for direct calls from Fortran (to eliminate two function call overheads
3386: */
3387: #if defined(PETSC_HAVE_FORTRAN_CAPS)
3388: #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
3389: #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
3390: #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
3391: #endif
3393: // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
3394: /*@C
3395: MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
3397: Collective
3399: Input Parameters:
3400: + matin - the matrix
3401: . min - number of input rows
3402: . im - input rows
3403: . nin - number of input columns
3404: . in - input columns
3405: . v - numerical values input
3406: - addvin - `INSERT_VALUES` or `ADD_VALUES`
3408: Level: advanced
3410: Developer Notes:
3411: This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
3413: .seealso: `Mat`, `MatSetValuesBlocked()`
3414: @*/
3415: PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3416: {
3417: /* convert input arguments to C version */
3418: Mat mat = *matin;
3419: PetscInt m = *min, n = *nin;
3420: InsertMode addv = *addvin;
3422: Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
3423: const MatScalar *value;
3424: MatScalar *barray = baij->barray;
3425: PetscBool roworiented = baij->roworiented;
3426: PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs;
3427: PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3428: PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
3430: PetscFunctionBegin;
3431: /* tasks normally handled by MatSetValuesBlocked() */
3432: if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
3433: else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
3434: PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3435: if (mat->assembled) {
3436: mat->was_assembled = PETSC_TRUE;
3437: mat->assembled = PETSC_FALSE;
3438: }
3439: PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
3441: if (!barray) {
3442: PetscCall(PetscMalloc1(bs2, &barray));
3443: baij->barray = barray;
3444: }
3446: if (roworiented) stepval = (n - 1) * bs;
3447: else stepval = (m - 1) * bs;
3449: for (i = 0; i < m; i++) {
3450: if (im[i] < 0) continue;
3451: PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
3452: if (im[i] >= rstart && im[i] < rend) {
3453: row = im[i] - rstart;
3454: for (j = 0; j < n; j++) {
3455: /* If NumCol = 1 then a copy is not required */
3456: if ((roworiented) && (n == 1)) {
3457: barray = (MatScalar *)v + i * bs2;
3458: } else if ((!roworiented) && (m == 1)) {
3459: barray = (MatScalar *)v + j * bs2;
3460: } else { /* Here a copy is required */
3461: if (roworiented) {
3462: value = v + i * (stepval + bs) * bs + j * bs;
3463: } else {
3464: value = v + j * (stepval + bs) * bs + i * bs;
3465: }
3466: for (ii = 0; ii < bs; ii++, value += stepval) {
3467: for (jj = 0; jj < bs; jj++) *barray++ = *value++;
3468: }
3469: barray -= bs2;
3470: }
3472: if (in[j] >= cstart && in[j] < cend) {
3473: col = in[j] - cstart;
3474: PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3475: } else if (in[j] < 0) {
3476: continue;
3477: } else {
3478: PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
3479: if (mat->was_assembled) {
3480: if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
3482: #if defined(PETSC_USE_DEBUG)
3483: #if defined(PETSC_USE_CTABLE)
3484: {
3485: PetscInt data;
3486: PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
3487: PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
3488: }
3489: #else
3490: PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
3491: #endif
3492: #endif
3493: #if defined(PETSC_USE_CTABLE)
3494: PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
3495: col = (col - 1) / bs;
3496: #else
3497: col = (baij->colmap[in[j]] - 1) / bs;
3498: #endif
3499: if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
3500: PetscCall(MatDisAssemble_MPIBAIJ(mat));
3501: col = in[j];
3502: }
3503: } else col = in[j];
3504: PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
3505: }
3506: }
3507: } else {
3508: if (!baij->donotstash) {
3509: if (roworiented) {
3510: PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
3511: } else {
3512: PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
3513: }
3514: }
3515: }
3516: }
3518: /* task normally handled by MatSetValuesBlocked() */
3519: PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
3520: PetscFunctionReturn(PETSC_SUCCESS);
3521: }
3523: /*@
3524: MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3526: Collective
3528: Input Parameters:
3529: + comm - MPI communicator
3530: . bs - the block size, only a block size of 1 is supported
3531: . m - number of local rows (Cannot be `PETSC_DECIDE`)
3532: . n - This value should be the same as the local size used in creating the
3533: x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3534: calculated if `N` is given) For square matrices `n` is almost always `m`.
3535: . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3536: . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3537: . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3538: . j - column indices
3539: - a - matrix values
3541: Output Parameter:
3542: . mat - the matrix
3544: Level: intermediate
3546: Notes:
3547: The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3548: thus you CANNOT change the matrix entries by changing the values of a[] after you have
3549: called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3551: The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
3552: the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
3553: block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory
3554: with column-major ordering within blocks.
3556: The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3558: .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3559: `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3560: @*/
3561: PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3562: {
3563: PetscFunctionBegin;
3564: PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
3565: PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
3566: PetscCall(MatCreate(comm, mat));
3567: PetscCall(MatSetSizes(*mat, m, n, M, N));
3568: PetscCall(MatSetType(*mat, MATMPIBAIJ));
3569: PetscCall(MatSetBlockSize(*mat, bs));
3570: PetscCall(MatSetUp(*mat));
3571: PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
3572: PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
3573: PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
3574: PetscFunctionReturn(PETSC_SUCCESS);
3575: }
3577: PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3578: {
3579: PetscInt m, N, i, rstart, nnz, Ii, bs, cbs;
3580: PetscInt *indx;
3581: PetscScalar *values;
3583: PetscFunctionBegin;
3584: PetscCall(MatGetSize(inmat, &m, &N));
3585: if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3586: Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
3587: PetscInt *dnz, *onz, mbs, Nbs, nbs;
3588: PetscInt *bindx, rmax = a->rmax, j;
3589: PetscMPIInt rank, size;
3591: PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
3592: mbs = m / bs;
3593: Nbs = N / cbs;
3594: if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3595: nbs = n / cbs;
3597: PetscCall(PetscMalloc1(rmax, &bindx));
3598: MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
3600: PetscCallMPI(MPI_Comm_rank(comm, &rank));
3601: PetscCallMPI(MPI_Comm_size(comm, &size));
3602: if (rank == size - 1) {
3603: /* Check sum(nbs) = Nbs */
3604: PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
3605: }
3607: rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3608: for (i = 0; i < mbs; i++) {
3609: PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3610: nnz = nnz / bs;
3611: for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
3612: PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
3613: PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3614: }
3615: PetscCall(PetscFree(bindx));
3617: PetscCall(MatCreate(comm, outmat));
3618: PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
3619: PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
3620: PetscCall(MatSetType(*outmat, MATBAIJ));
3621: PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
3622: PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3623: MatPreallocateEnd(dnz, onz);
3624: PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3625: }
3627: /* numeric phase */
3628: PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
3629: PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3631: for (i = 0; i < m; i++) {
3632: PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3633: Ii = i + rstart;
3634: PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
3635: PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3636: }
3637: PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
3638: PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
3639: PetscFunctionReturn(PETSC_SUCCESS);
3640: }